CX291651
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX291651 vs. ExPASy Swiss-Prot
Match: SMD3_XENLA (Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis GN=snrpd3 PE=2 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.413e-29 Identity = 54/94 (57.45%), Postives = 76/94 (80.85%), Query Frame = 3 Query: 42 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSS 323 S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V+IRGSK+RF+++PDMLKNAPM K + + +G + Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGA 95
BLAST of CX291651 vs. ExPASy Swiss-Prot
Match: SMD3_MOUSE (Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus GN=Snrpd3 PE=1 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.413e-29 Identity = 54/94 (57.45%), Postives = 76/94 (80.85%), Query Frame = 3 Query: 42 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSS 323 S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V+IRGSK+RF+++PDMLKNAPM K + + +G + Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGA 95
BLAST of CX291651 vs. ExPASy Swiss-Prot
Match: SMD3_HUMAN (Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens GN=SNRPD3 PE=1 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.413e-29 Identity = 54/94 (57.45%), Postives = 76/94 (80.85%), Query Frame = 3 Query: 42 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSS 323 S+G+P+K+LHEA GH+VT E +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V+IRGSK+RF+++PDMLKNAPM K + + +G + Sbjct: 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGA 95
BLAST of CX291651 vs. ExPASy Swiss-Prot
Match: SMD3_DROME (Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanogaster GN=SmD3 PE=1 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.729e-27 Identity = 50/84 (59.52%), Postives = 71/84 (84.52%), Query Frame = 3 Query: 42 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKR 293 S+G+P+K+LHEA GH++T E +GE+YRG ++E EDN NCQ+ IT T +DG+ + LE+V+IRGSK+RF+++PDMLKNAPMFK+ Sbjct: 2 SIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGSKIRFLILPDMLKNAPMFKK 85
BLAST of CX291651 vs. ExPASy Swiss-Prot
Match: SMD3_CAEEL (Small nuclear ribonucleoprotein Sm D3 OS=Caenorhabditis elegans GN=snr-1 PE=2 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 6.571e-27 Identity = 53/91 (58.24%), Postives = 71/91 (78.02%), Query Frame = 3 Query: 42 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKG 314 S+G+P+K+LHEA GH+VT+E +GE+YRG + E EDN NCQL T +DG+ QL++VFIRG+K+RFM++PDMLKNAPMFK + KG Sbjct: 3 SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKIRFMILPDMLKNAPMFKNIGRAQKG 93
BLAST of CX291651 vs. ExPASy Swiss-Prot
Match: SMD3_SCHPO (Probable small nuclear ribonucleoprotein Sm D3 OS=Schizosaccharomyces pombe GN=smd3 PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.605e-25 Identity = 47/82 (57.32%), Postives = 68/82 (82.93%), Query Frame = 3 Query: 45 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFK 290 + + +KLLHE GH+VT+EL++G YRG ++E EDN NCQ+ +I+ TA+DG+VS L+ V+IRGS +RF+++PDML+NAPMFK Sbjct: 1 MSLCIKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVYIRGSHIRFLIVPDMLRNAPMFK 82
BLAST of CX291651 vs. ExPASy Swiss-Prot
Match: SMD3_YEAST (Small nuclear ribonucleoprotein Sm D3 OS=Saccharomyces cerevisiae GN=SMD3 PE=1 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21 Identity = 44/86 (51.16%), Postives = 67/86 (77.91%), Query Frame = 3 Query: 48 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAR 305 GIPVKLL+EA GH+V++EL +G YRG +VE ED+ N QL ++ T G V+ ++ +F+RGS+++F+V+PD+LKNAP+FK+ +R Sbjct: 5 GIPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQGAVTHMDQIFVRGSQIKFIVVPDLLKNAPLFKKNSSR 90 The following BLAST results are available for this feature:
BLAST of CX291651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX291651 ID=CX291651; Name=CX291651; organism=Citrus clementina; type=EST; length=714bpback to top |