CX291842

Overview
NameCX291842
Unique NameCX291842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig777 contig Ccv1_Contig777:654..1197. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291842 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.048e-32
Identity = 68/80 (85.00%), Postives = 77/80 (96.25%), Query Frame = 3
Query:    6 TEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 245
            TEDGK+FAE+ESLYFMETSAL+ATNVENAFTEVLTQIY+IVSKRAVEAG +G++S LPSKG+TINVK+DSSVLKR GCCS
Sbjct:  138 TEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPSKGQTINVKEDSSVLKRFGCCS 217          
BLAST of CX291842 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.302e-30
Identity = 64/82 (78.05%), Postives = 73/82 (89.02%), Query Frame = 3
Query:    3 STEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 248
            STEDGKAFAE+ESLYFMETSAL+ATNVENAF+EVLTQIY+IVSKRAVEAG   + S +PS+G+TINV +DSSVL R  CCSN
Sbjct:  137 STEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEAGDRPSTSVVPSQGQTINVNEDSSVLNRYRCCSN 218          
BLAST of CX291842 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.120e-29
Identity = 64/81 (79.01%), Postives = 73/81 (90.12%), Query Frame = 3
Query:    6 TEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 248
            TE+ KAFAE+ESLYFMETSALDATNVENAFTEVLTQI+KIVSKR+V+ G  G ++ LP KGETINVK+D SVLKR+GCCSN
Sbjct:  138 TEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDGG--GESADLPGKGETINVKEDGSVLKRMGCCSN 216          
BLAST of CX291842 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.465e-26
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = 3
Query:    3 STEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 248
            ST++ K  AE+E LYFMETSAL+ATNVENAFTE LTQIY+IVSK+AVEAG  G  S+ P KGETIN+KD+ S  K+ GCCS+
Sbjct:  137 STDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSSAPPKGETINIKDEGSSWKKFGCCSS 218          
BLAST of CX291842 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 3.610e-25
Identity = 57/80 (71.25%), Postives = 69/80 (86.25%), Query Frame = 3
Query:    6 TEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 245
            T++GKAFAE+ESLYFMETSAL++TNVENAF EVLTQIY+IVSKR+VEAG +  A + P KGE IN+KDD S +K+ GCCS
Sbjct:  139 TDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAGDD--AGSGPGKGEKINIKDDVSAVKKGGCCS 216          
BLAST of CX291842 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.372e-24
Identity = 57/81 (70.37%), Postives = 67/81 (82.72%), Query Frame = 3
Query:    6 TEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 248
            TEDGK++AEQESL FMETSAL+ATNVE+AF EVLTQIY+I SK+ VEAG +G AS    KGE I VK+D S LK++GCCSN
Sbjct:  138 TEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAGEDGNASV--PKGEKIEVKNDVSALKKLGCCSN 216          
BLAST of CX291842 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.677e-22
Identity = 53/81 (65.43%), Postives = 67/81 (82.72%), Query Frame = 3
Query:    6 TEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCSN 248
            TED K+FAE+ESLYFMETSAL+ATNVENAF EVLTQI+ IVSK+A+EA S   ++ +PSKG+ I++  D S +K+ GCCSN
Sbjct:  138 TEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASE--SANVPSKGDKIDIGKDVSAVKKGGCCSN 216          
BLAST of CX291842 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.419e-21
Identity = 53/83 (63.86%), Postives = 69/83 (83.13%), Query Frame = 3
Query:    3 STEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINV-KDDSSVLKRIGCCSN 248
            STED KAFAE+E+ +FMETSAL++ NVENAFTEVLT+IYK+V ++A+E G +  A  LP KG+TINV KDD S +K++GCCS+
Sbjct:  138 STEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVGDDPAA--LP-KGQTINVGKDDVSAVKKVGCCSS 217          
BLAST of CX291842 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.164e-15
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 3
Query:    3 STEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 245
            S +DG A +E+E L F+ETSAL+ATN+E AF  +LT+IY IVSK+A+ A      +++P +G TINV D S   K+ GCCS
Sbjct:  136 SEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVADTSGNTKK-GCCS 215          
BLAST of CX291842 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.776e-15
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 3
Query:    3 STEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 245
            S +D +A  ++E L F+ETSAL+A NV+ AF  +LT IY I+SK+A+ A     ++ LP +G TINV D+S+ +KR GCCS
Sbjct:  136 SEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYHIISKKALAAQEAAASTALPGQGTTINVSDNSANVKR-GCCS 215          
The following BLAST results are available for this feature:
BLAST of CX291842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RB11D_LOTJA1.048e-3285.00Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RB11E_LOTJA8.302e-3078.05Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RAA1A_ARATH4.120e-2979.01Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
YPT3_NICPL1.465e-2668.29Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RIC2_ORYSJ3.610e-2571.25Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RAA1B_ARATH1.372e-2470.37Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RAA1C_ARATH1.677e-2265.43Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RB11B_TOBAC1.419e-2163.86Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RB11C_LOTJA1.164e-1551.85Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RB11A_TOBAC5.776e-1549.38Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]

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Properties
Property NameValue
Genbank descriptionC04005H07SK FlavFr1 Citrus clementina cDNA clone C04005H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291842 ID=CX291842; Name=CX291842; organism=Citrus clementina; type=EST; length=545bp
GCTCAACTGAGGATGGGAAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTC
ATGGAGACTTCCGCATTGGATGCAACCAATGTGGAAAATGCTTTTACTGA
GGTTCTTACTCAGATATACAAGATCGTGAGCAAGAGAGCAGTTGAAGCAG
GCAGCAATGGAACTGCTTCCACACTTCCATCTAAAGGAGAGACGATAAAT
GTCAAAGACGATTCATCCGTTCTAAAGAGAATTGGATGCTGCTCAAACTA
GGGAGATATATTCGGTTACCAGATTTTACAGCATTGGGCAATTTACTTGT
ACATGATCAAAGTAATCTGTGTAAAATGAAAAACTACCGTCTGGTATTGA
ATTTTTCCTAAAAGGCCTCTCTCAAAGAACTCTAGATTGTCTGTAATAAA
ACCAACATTTGTGTAATTCATTTGATTACCTGAAACATATGTATTGTATT
CTCAATCCTGACAGAGTATTGCCTGTAGACTTTCTTTTTTTTGTTTTCTT
CAAGTGATTAAATATGAAGTTTGCTAATATGCGCAGGGCATTTGC
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