CX292237

Overview
NameCX292237
Unique NameCX292237
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15093 contig Ccv1_Contig15093:1291..2015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX292237 vs. ExPASy Swiss-Prot
Match: ERF1Z_ARATH (Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.602e-14
Identity = 35/43 (81.40%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:   34 HKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE 162
            +KSQEGSQFCRGFGGIGG+LRYQLDMR+FDE S DGE+Y+DS+
Sbjct:  394 NKSQEGSQFCRGFGGIGGLLRYQLDMRTFDELS-DGEVYEDSD 435
[Close]
BLAST of CX292237 vs. ExPASy Swiss-Prot
Match: ERF1Y_ARATH (Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.282e-13
Identity = 34/43 (79.07%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:   34 HKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE 162
            +KSQEGSQFCRGFGGIGG+LRYQLDMR+FDE SD  E+Y+DS+
Sbjct:  393 NKSQEGSQFCRGFGGIGGMLRYQLDMRTFDELSDT-EVYEDSD 434
[Close]
BLAST of CX292237 vs. ExPASy Swiss-Prot
Match: ERF1X_ARATH (Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=ERF1-1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:   34 HKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDD 156
            +KSQEGSQFCRGFGGIGGILRYQLDM +FD  S+DGE  DD
Sbjct:  395 NKSQEGSQFCRGFGGIGGILRYQLDMTAFD--SEDGEALDD 433
The following BLAST results are available for this feature:
BLAST of CX292237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ERF1Z_ARATH8.602e-1481.40Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1Y_ARATH7.282e-1379.07Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1X_ARATH3.059e-1180.49Eukaryotic peptide chain release factor subunit 1-... [more]
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Properties
Property NameValue
Genbank descriptionC04013A11SK FlavFr1 Citrus clementina cDNA clone C04013A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292237 ID=CX292237; Name=CX292237; organism=Citrus clementina; type=EST; length=724bp
AATTCGGCACGAGGGCACACTCGAGTTTGTTACCACAAATCACAAGAGGG
ATCCCAGTTTTGCAGAGGCTTTGGCGGTATTGGTGGAATACTCCGCTACC
AGCTTGATATGAGATCATTTGATGAGTTTTCTGATGATGGAGAAATTTAT
GATGATTCTGAATAGCAATCAATCAAACCTACCCAATTGCTGGTGCAGGA
TGACGACGTGAAGGGCCTGCACCAGCGCGCGATTCGTCGCGCCAACTTCG
GAGTACCTATGTTCCAAAATGTTCCCAAGTTGCTGCTGAGGTACGATTAT
GTCATGTCTTAGCTGAGCAAGCTATCTATGATTCTGTTATATGGGCTTTG
TAATGGCGCTGCTGGATATGATCCAGAAGGGAGGAATTATGCAAAGCTAC
TAGCTCCAGAAGGGAGGAATTATGCAAAGCTACTAGCTAATGTTGGTTAG
GACCTTACGAATACCTCGCATTCAGATGATGGATATGGGGATCTCTCCCA
TGGCAAGCCCTAGGGGCTTGTGGATTGAAACTGTTCTCTCAGACTTGGGT
TTATCTTTTTATGGTTCTATTGTCTGTACAATGCATGTTAATCAGTGTGA
TGGATCTCCTGTTGTCTGTCGGACTGGGTTATTTGTTTAAGGTTATGTTG
TTTAACATGCTTGTTAGATCTCATCTTTGTAGGCCATGGCTTGCTATATA
TAAGTGATCTGTTTTGTTGAAAAA
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