CX294268

Overview
NameCX294268
Unique NameCX294268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length592
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14535 contig Ccv1_Contig14535:514..1105. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RM16_ARATH (60S ribosomal protein L16, mitochondrial OS=Arabidopsis thaliana GN=RPL16 PE=2 SV=3)

HSP 1 Score: 227.639 bits (579), Expect = 3.488e-59
Identity = 112/129 (86.82%), Postives = 114/129 (88.37%), Query Frame = 3
Query:    3 RRSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQWS 389
            R SRGCKPDGT+LGFGRYGIKS KAG LSY           G FHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSL+NARQAATLAAHKLCLSTKFVQWS
Sbjct:   51 RCSRGCKPDGTKLGFGRYGIKSCKAGCLSYRAIEAARRAIIGHFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLANARQAATLAAHKLCLSTKFVQWS 179          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RM16_ORYSJ (60S ribosomal protein L16, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL16 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 8.890e-55
Identity = 106/129 (82.17%), Postives = 108/129 (83.72%), Query Frame = 3
Query:    3 RRSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQWS 389
            R SRGC+PDGTQLGFGRYG KS +AGRLSY           GQFHRAMSGQFRRN KIWVRV ADLPITGKP EVRMGRGKGNPTGWIARVSTGQI FEMDGVSLSNARQAA LAAHK C STKFVQWS
Sbjct:   57 RCSRGCEPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRATIGQFHRAMSGQFRRNCKIWVRVLADLPITGKPAEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAARLAAHKPCSSTKFVQWS 185          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RM16_MAIZE (60S ribosomal protein L16, mitochondrial OS=Zea mays GN=RPL16 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.854e-52
Identity = 104/129 (80.62%), Postives = 106/129 (82.17%), Query Frame = 3
Query:    3 RRSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQWS 389
            R SRG +PDGTQLGFGRYG KS +AGRLSY           GQF RAMSGQFRRN KIWVRV ADLPITGKP EVRMGRGKGNPTGWIARVSTGQI FEMDGVSLSNARQAA LAAHK C STKFVQWS
Sbjct:   57 RCSRGREPDGTQLGFGRYGTKSSRAGRLSYRAIEAARRATIGQFRRAMSGQFRRNCKIWVRVLADLPITGKPAEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAARLAAHKPCSSTKFVQWS 185          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RM16_BRANA (60S ribosomal protein L16, mitochondrial OS=Brassica napus GN=RPL16 PE=3 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 1.569e-51
Identity = 103/130 (79.23%), Postives = 106/130 (81.54%), Query Frame = 3
Query:    3 RRSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQ-FHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQWS 389
            R SRGCKPDGT+LGFGRYG KS +AGRLSY           G  F RAMSGQFRRN KIWVRV ADLPITGKP EVRMGRGKGNPTGWIARVSTGQI FEMDGVSL+NARQAA LAAHK C STKFVQWS
Sbjct:   48 RCSRGCKPDGTKLGFGRYGTKSCRAGRLSYRAIEAARRATIGHSFRRAMSGQFRRNCKIWVRVLADLPITGKPAEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLANARQAARLAAHKPCSSTKFVQWS 177          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RM16_PETHY (60S ribosomal protein L16, mitochondrial OS=Petunia hybrida GN=RPL16 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.345e-47
Identity = 92/111 (82.88%), Postives = 94/111 (84.68%), Query Frame = 3
Query:    3 RRSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQA 335
            R SRGCKPDGTQLGFGRYG KS +AGRLSY           G FHRAMSGQFRRNGKIWVRV AD+PITGKPTEVRMGRGKGNPTGWIARVS GQILFEMDGVSLSNARQA
Sbjct:   43 RCSRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGHFHRAMSGQFRRNGKIWVRVLADIPITGKPTEVRMGRGKGNPTGWIARVSRGQILFEMDGVSLSNARQA 153          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RM16_MARPO (60S ribosomal protein L16, mitochondrial OS=Marchantia polymorpha GN=RPL16 PE=3 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 2.511e-41
Identity = 87/128 (67.97%), Postives = 97/128 (75.78%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQWS 389
            R +GCK DGTQL FG+YGIKS +AGR+SY               RA+S +FRRN KIWVRVFAD+PIT KP EVRMG+GKGN  GWIARV  GQILFEMD VSLSNA+QAATLAAHKL LS KF +WS
Sbjct:   16 RCKGCKADGTQLCFGKYGIKSCEAGRISYQAIEAA--------RRAISRKFRRNSKIWVRVFADIPITSKPAEVRMGKGKGNTKGWIARVLKGQILFEMDCVSLSNAQQAATLAAHKLGLSIKFFKWS 135          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_XANP2 (50S ribosomal protein L16 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplP PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.523e-25
Identity = 55/126 (43.65%), Postives = 81/126 (64.29%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383
            R  G    GT+L FG +G+K+ +  R++                RA++   +R G++W+RVF D+P++ KPTEVRMG+GKG P  W AR+  G+I+FE+DGVS+  AR+A TLAA KL + T+F+Q
Sbjct:   16 RIHGVAKGGTELNFGEFGLKAVEPERVTARQIEAA--------RRALTRHMKRAGRVWIRVFPDVPVSAKPTEVRMGKGKGAPEYWAARIKPGRIMFEIDGVSVETAREALTLAAAKLPIKTRFIQ 133          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_AZOC5 (50S ribosomal protein L16 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplP PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.252e-24
Identity = 55/126 (43.65%), Postives = 80/126 (63.49%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383
            R  G    GT+L FG +G+K+ +  R++                RA++   +R G++W+RVF D+P+T KPTEVRMG+GKG P  W A+V  G+I+FE+DGV +  AR+A TLAA KL + T+F+Q
Sbjct:   16 RIHGVAKGGTELNFGEFGLKALEPERVTARQIEAA--------RRALTRHMKRAGRVWIRVFPDVPVTSKPTEVRMGKGKGAPEYWAAKVKPGRIMFEIDGVPVDLAREALTLAAAKLPIKTRFIQ 133          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_BRAJA (50S ribosomal protein L16 OS=Bradyrhizobium japonicum GN=rplP PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.789e-24
Identity = 55/126 (43.65%), Postives = 79/126 (62.70%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383
            R  G    G  L FG+YG+K+ +  R++                RA++   +R G++W+RVF DLP++ KP EVRMG GKG+P  W+ARV  G++LFE+DGV+   AR+A TLAA KL + T+FV+
Sbjct:   15 RIHGVASSGATLAFGQYGLKATEPERVTARQIEAA--------RRALTRHMKRAGRVWIRVFPDLPVSKKPAEVRMGSGKGSPELWVARVKPGRVLFEIDGVNTQTAREALTLAAAKLPIKTRFVE 132          
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_TERTT (50S ribosomal protein L16 OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=rplP PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.384e-23
Identity = 57/128 (44.53%), Postives = 80/128 (62.50%), Query Frame = 3
Query:    6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQWS 389
            R+RG    G+++ FG +G+K+   GR++                RAM+   +R GKIW+RVF D PIT KP EVR G+GKGN   W+A++  G++L+EM+GVS   AR+A  LAA KL L+T FV+ S
Sbjct:   16 RNRGLAQRGSKVSFGEFGLKAVARGRITARQIEAA--------RRAMTRHVKRGGKIWIRVFPDKPITEKPLEVRQGKGKGNVEYWVAQIQPGKVLYEMEGVSEELAREAFALAAAKLPLNTTFVKRS 135          
The following BLAST results are available for this feature:
BLAST of CX294268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RM16_ARATH3.488e-5986.8260S ribosomal protein L16, mitochondrial OS=Arabid... [more]
RM16_ORYSJ8.890e-5582.1760S ribosomal protein L16, mitochondrial OS=Oryza ... [more]
RM16_MAIZE1.854e-5280.6260S ribosomal protein L16, mitochondrial OS=Zea ma... [more]
RM16_BRANA1.569e-5179.2360S ribosomal protein L16, mitochondrial OS=Brassi... [more]
RM16_PETHY2.345e-4782.8860S ribosomal protein L16, mitochondrial OS=Petuni... [more]
RM16_MARPO2.511e-4167.9760S ribosomal protein L16, mitochondrial OS=Marcha... [more]
RL16_XANP22.523e-2543.6550S ribosomal protein L16 OS=Xanthobacter autotrop... [more]
RL16_AZOC51.252e-2443.6550S ribosomal protein L16 OS=Azorhizobium caulinod... [more]
RL16_BRAJA2.789e-2443.6550S ribosomal protein L16 OS=Bradyrhizobium japoni... [more]
RL16_TERTT1.384e-2344.5350S ribosomal protein L16 OS=Teredinibacter turner... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05014D08SK AbsAOv1 Citrus clementina cDNA clone C05014D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294268 ID=CX294268; Name=CX294268; organism=Citrus clementina; type=EST; length=592bp
GCAGACGTAGTAGGGGTTGCAAACCGGACGGTACACAACTTGGTTTTGGA
AGATATGGCATTAAAAGTTATAAAGCTGGTCGTCTTTCATATCGAGCCAT
TGAAGCAGCGCGTCGGGCTATAATCGGACAATTCCATCGTGCTATGAGCG
GACAATTCCGAAGAAATGGTAAGATATGGGTAAGAGTTTTCGCGGATCTC
CCTATTACCGGGAAACCTACAGAAGTAAGAATGGGAAGAGGAAAAGGAAA
TCCTACGGGTTGGATTGCTCGTGTGTCCACGGGACAAATCCTATTTGAAA
TGGATGGTGTGAGTTTGTCAAATGCTCGACAAGCCGCTACATTAGCGGCG
CATAAACTATGTTTGTCAACCAAGTTTGTTCAGTGGTCGTAACATAATTG
GTTAGTGGGGAAAACCCCGGCCGATAAAAATGAGGCGAAGTGCTTGTTCC
TGAACGACAGAAGTCGAAGTGGAAAGACACTAAGGGGGGAGCCAGATGAT
AACAAGGATAAGACAAGAAAAGACCGAAGGAGATAGAGAAAAGATGAATT
CTCTGTCTGAATACGGACAGCCTATTCGTGACTGAAGAGCGA
back to top