CX294268
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RM16_ARATH (60S ribosomal protein L16, mitochondrial OS=Arabidopsis thaliana GN=RPL16 PE=2 SV=3) HSP 1 Score: 227.639 bits (579), Expect = 3.488e-59 Identity = 112/129 (86.82%), Postives = 114/129 (88.37%), Query Frame = 3 Query: 3 RRSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQWS 389 R SRGCKPDGT+LGFGRYGIKS KAG LSY G FHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSL+NARQAATLAAHKLCLSTKFVQWS Sbjct: 51 RCSRGCKPDGTKLGFGRYGIKSCKAGCLSYRAIEAARRAIIGHFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLANARQAATLAAHKLCLSTKFVQWS 179
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RM16_ORYSJ (60S ribosomal protein L16, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL16 PE=3 SV=1) HSP 1 Score: 213.001 bits (541), Expect = 8.890e-55 Identity = 106/129 (82.17%), Postives = 108/129 (83.72%), Query Frame = 3 Query: 3 RRSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQWS 389 R SRGC+PDGTQLGFGRYG KS +AGRLSY GQFHRAMSGQFRRN KIWVRV ADLPITGKP EVRMGRGKGNPTGWIARVSTGQI FEMDGVSLSNARQAA LAAHK C STKFVQWS Sbjct: 57 RCSRGCEPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRATIGQFHRAMSGQFRRNCKIWVRVLADLPITGKPAEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAARLAAHKPCSSTKFVQWS 185
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RM16_MAIZE (60S ribosomal protein L16, mitochondrial OS=Zea mays GN=RPL16 PE=3 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 1.854e-52 Identity = 104/129 (80.62%), Postives = 106/129 (82.17%), Query Frame = 3 Query: 3 RRSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQWS 389 R SRG +PDGTQLGFGRYG KS +AGRLSY GQF RAMSGQFRRN KIWVRV ADLPITGKP EVRMGRGKGNPTGWIARVSTGQI FEMDGVSLSNARQAA LAAHK C STKFVQWS Sbjct: 57 RCSRGREPDGTQLGFGRYGTKSSRAGRLSYRAIEAARRATIGQFRRAMSGQFRRNCKIWVRVLADLPITGKPAEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAARLAAHKPCSSTKFVQWS 185
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RM16_BRANA (60S ribosomal protein L16, mitochondrial OS=Brassica napus GN=RPL16 PE=3 SV=2) HSP 1 Score: 202.216 bits (513), Expect = 1.569e-51 Identity = 103/130 (79.23%), Postives = 106/130 (81.54%), Query Frame = 3 Query: 3 RRSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQ-FHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQWS 389 R SRGCKPDGT+LGFGRYG KS +AGRLSY G F RAMSGQFRRN KIWVRV ADLPITGKP EVRMGRGKGNPTGWIARVSTGQI FEMDGVSL+NARQAA LAAHK C STKFVQWS Sbjct: 48 RCSRGCKPDGTKLGFGRYGTKSCRAGRLSYRAIEAARRATIGHSFRRAMSGQFRRNCKIWVRVLADLPITGKPAEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLANARQAARLAAHKPCSSTKFVQWS 177
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RM16_PETHY (60S ribosomal protein L16, mitochondrial OS=Petunia hybrida GN=RPL16 PE=2 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 2.345e-47 Identity = 92/111 (82.88%), Postives = 94/111 (84.68%), Query Frame = 3 Query: 3 RRSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQA 335 R SRGCKPDGTQLGFGRYG KS +AGRLSY G FHRAMSGQFRRNGKIWVRV AD+PITGKPTEVRMGRGKGNPTGWIARVS GQILFEMDGVSLSNARQA Sbjct: 43 RCSRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGHFHRAMSGQFRRNGKIWVRVLADIPITGKPTEVRMGRGKGNPTGWIARVSRGQILFEMDGVSLSNARQA 153
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RM16_MARPO (60S ribosomal protein L16, mitochondrial OS=Marchantia polymorpha GN=RPL16 PE=3 SV=2) HSP 1 Score: 168.318 bits (425), Expect = 2.511e-41 Identity = 87/128 (67.97%), Postives = 97/128 (75.78%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQWS 389 R +GCK DGTQL FG+YGIKS +AGR+SY RA+S +FRRN KIWVRVFAD+PIT KP EVRMG+GKGN GWIARV GQILFEMD VSLSNA+QAATLAAHKL LS KF +WS Sbjct: 16 RCKGCKADGTQLCFGKYGIKSCEAGRISYQAIEAA--------RRAISRKFRRNSKIWVRVFADIPITSKPAEVRMGKGKGNTKGWIARVLKGQILFEMDCVSLSNAQQAATLAAHKLGLSIKFFKWS 135
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_XANP2 (50S ribosomal protein L16 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplP PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 2.523e-25 Identity = 55/126 (43.65%), Postives = 81/126 (64.29%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383 R G GT+L FG +G+K+ + R++ RA++ +R G++W+RVF D+P++ KPTEVRMG+GKG P W AR+ G+I+FE+DGVS+ AR+A TLAA KL + T+F+Q Sbjct: 16 RIHGVAKGGTELNFGEFGLKAVEPERVTARQIEAA--------RRALTRHMKRAGRVWIRVFPDVPVSAKPTEVRMGKGKGAPEYWAARIKPGRIMFEIDGVSVETAREALTLAAAKLPIKTRFIQ 133
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_AZOC5 (50S ribosomal protein L16 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplP PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.252e-24 Identity = 55/126 (43.65%), Postives = 80/126 (63.49%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383 R G GT+L FG +G+K+ + R++ RA++ +R G++W+RVF D+P+T KPTEVRMG+GKG P W A+V G+I+FE+DGV + AR+A TLAA KL + T+F+Q Sbjct: 16 RIHGVAKGGTELNFGEFGLKALEPERVTARQIEAA--------RRALTRHMKRAGRVWIRVFPDVPVTSKPTEVRMGKGKGAPEYWAAKVKPGRIMFEIDGVPVDLAREALTLAAAKLPIKTRFIQ 133
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_BRAJA (50S ribosomal protein L16 OS=Bradyrhizobium japonicum GN=rplP PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 2.789e-24 Identity = 55/126 (43.65%), Postives = 79/126 (62.70%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQ 383 R G G L FG+YG+K+ + R++ RA++ +R G++W+RVF DLP++ KP EVRMG GKG+P W+ARV G++LFE+DGV+ AR+A TLAA KL + T+FV+ Sbjct: 15 RIHGVASSGATLAFGQYGLKATEPERVTARQIEAA--------RRALTRHMKRAGRVWIRVFPDLPVSKKPAEVRMGSGKGSPELWVARVKPGRVLFEIDGVNTQTAREALTLAAAKLPIKTRFVE 132
BLAST of CX294268 vs. ExPASy Swiss-Prot
Match: RL16_TERTT (50S ribosomal protein L16 OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=rplP PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.384e-23 Identity = 57/128 (44.53%), Postives = 80/128 (62.50%), Query Frame = 3 Query: 6 RSRGCKPDGTQLGFGRYGIKSYKAGRLSYXXXXXXXXXXXGQFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHKLCLSTKFVQWS 389 R+RG G+++ FG +G+K+ GR++ RAM+ +R GKIW+RVF D PIT KP EVR G+GKGN W+A++ G++L+EM+GVS AR+A LAA KL L+T FV+ S Sbjct: 16 RNRGLAQRGSKVSFGEFGLKAVARGRITARQIEAA--------RRAMTRHVKRGGKIWIRVFPDKPITEKPLEVRQGKGKGNVEYWVAQIQPGKVLYEMEGVSEELAREAFALAAAKLPLNTTFVKRS 135 The following BLAST results are available for this feature:
BLAST of CX294268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294268 ID=CX294268; Name=CX294268; organism=Citrus clementina; type=EST; length=592bpback to top |