CX295565
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: PTBP3_ARATH (Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana GN=At1g43190 PE=2 SV=1) HSP 1 Score: 268.47 bits (685), Expect = 2.068e-71 Identity = 133/151 (88.08%), Postives = 143/151 (94.70%), Query Frame = 2 Query: 65 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 517 M E SKV+HVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDV SA++ALQF+TNVQPTIRGRNVYVQFSSHQELTT+EQN GR DEPNRILLVTIHHMLYPITV+VLHQVFSP+GFVEK+VTFQKSAGFQALIQYQ++ A Sbjct: 1 MAESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQFFTNVQPTIRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHMLYPITVDVLHQVFSPYGFVEKLVTFQKSAGFQALIQYQVQQCA 151
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: PTBP1_RAT (Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus GN=Ptbp1 PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 9.097e-27 Identity = 63/174 (36.21%), Postives = 98/174 (56.32%), Query Frame = 2 Query: 74 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR--------------------------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499 PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+V P +RG+ +Y+QFS+H+EL T Q R G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMSTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQY 227
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: PTBP1_PIG (Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.188e-26 Identity = 62/174 (35.63%), Postives = 98/174 (56.32%), Query Frame = 2 Query: 74 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR--------------------------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499 PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+V P +RG+ +Y+QFS+H+EL T Q R G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY Sbjct: 57 PSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQY 228
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: PTBP1_BOVIN (Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.552e-26 Identity = 62/174 (35.63%), Postives = 98/174 (56.32%), Query Frame = 2 Query: 74 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR--------------------------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499 PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+V P +RG+ +Y+QFS+H+EL T Q R G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY Sbjct: 57 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMHTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQY 228
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: PTBP1_MOUSE (Polypyrimidine tract-binding protein 1 OS=Mus musculus GN=Ptbp1 PE=1 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 2.027e-26 Identity = 63/174 (36.21%), Postives = 98/174 (56.32%), Query Frame = 2 Query: 74 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR--------------------------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499 PS+VIHVR + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+V P +RG+ +Y+QFS+H+EL T Q R G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDSSPNQVRAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQY 227
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: PTBP1_HUMAN (Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.027e-26 Identity = 62/174 (35.63%), Postives = 98/174 (56.32%), Query Frame = 2 Query: 74 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR--------------------------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499 PS+VIH+R + +++E +++ L PFG +T L+ML+ KNQA ++M +A + +YT+V P +RG+ +Y+QFS+H+EL T Q R G P +L + + ++ YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY Sbjct: 57 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSP--VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQY 228
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: ROD1_RAT (Regulator of differentiation 1 OS=Rattus norvegicus GN=Rod1 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.241e-25 Identity = 62/172 (36.05%), Postives = 97/172 (56.40%), Query Frame = 2 Query: 74 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR------------------------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499 PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT V P +R + VY+Q+S+H+EL T Q R G P +L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY Sbjct: 28 PSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYTPVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATSNEGTLLPGQSP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQY 197
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: ROD1_MOUSE (Regulator of differentiation 1 OS=Mus musculus GN=Rod1 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.241e-25 Identity = 62/172 (36.05%), Postives = 97/172 (56.40%), Query Frame = 2 Query: 74 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR------------------------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499 PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT V P +R + VY+Q+S+H+EL T Q R G P +L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY Sbjct: 28 PSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMINYYTPVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATANEGTLLPGQSP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQY 197
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: ROD1_HUMAN (Regulator of differentiation 1 OS=Homo sapiens GN=ROD1 PE=1 SV=2) HSP 1 Score: 115.161 bits (287), Expect = 2.926e-25 Identity = 61/172 (35.47%), Postives = 97/172 (56.40%), Query Frame = 2 Query: 74 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGR------------------------------GDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499 PS+V+H+R + +++E +++ L PFG +T L+ML+ K+QA L+M +A+ + +YT + P +R + VY+Q+S+H+EL T Q R G P +L + I ++ YP+T+EVLHQ+FS G V KI+TF K+ FQAL+QY Sbjct: 57 PSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSP--VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQY 226
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: PTBP2_RAT (Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus GN=Ptbp2 PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 2.926e-25 Identity = 60/171 (35.09%), Postives = 99/171 (57.89%), Query Frame = 2 Query: 74 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQEL-----------------------------TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499 PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+ V P +R + +Y+Q+S+H+EL TT+ ++A P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQY 225 The following BLAST results are available for this feature:
BLAST of CX295565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295565 ID=CX295565; Name=CX295565; organism=Citrus clementina; type=EST; length=636bpback to top |