CX295574
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: ERCC6_HUMAN (DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.363e-36 Identity = 70/103 (67.96%), Postives = 85/103 (82.52%), Query Frame = 3 Query: 12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDV 320 NRV+I+DPDWNPSTD QARERAWRIGQK+ VTVYRL+T GTIEEK+YHRQI+K FLTN++LK+P+QRRFFK+ ++ +LFTL STETS IF+ DV Sbjct: 927 NRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTLTSPDASQSTETSAIFAGTGSDV 1029
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: RHP26_SCHPO (DNA repair protein rhp26 OS=Schizosaccharomyces pombe GN=rhp26 PE=2 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35 Identity = 69/96 (71.88%), Postives = 83/96 (86.46%), Query Frame = 3 Query: 12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGSTETSNIF 299 +RVI+FDPDWNPSTD QARERAWR+GQK+DV VYRL+T GTIEEK+YHRQI+K FLTNKILK+P+QRRFFK ++ DLFTL D+ G TET ++F Sbjct: 714 DRVILFDPDWNPSTDAQARERAWRLGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQRRFFKMTDLHDLFTLGDNKTEG-TETGSMF 808
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: RAD26_YEAST (DNA repair and recombination protein RAD26 OS=Saccharomyces cerevisiae GN=RAD26 PE=1 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.474e-32 Identity = 63/94 (67.02%), Postives = 80/94 (85.11%), Query Frame = 3 Query: 12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGSTETSN 293 NR+IIFDPDWNPSTD+QARERAWRIGQK++V++YRL+ G+IEEK+YHRQI+K FLTN+IL +P+Q+RFFK + DLF+L + NG STE N Sbjct: 743 NRIIIFDPDWNPSTDMQARERAWRIGQKREVSIYRLMVGGSIEEKIYHRQIFKQFLTNRILTDPKQKRFFKIHELHDLFSLGGE-NGYSTEELN 835
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: ERC6L_BOVIN (DNA excision repair protein ERCC-6-like OS=Bos taurus GN=ERCC6L PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.977e-19 Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = 3 Query: 12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFL---TNKILKNPQQRRFFKARNMKDLFTLNDDGNGGS 278 +RV+IFDP WNP+TD QA +R +RIGQK++V VYRLIT GT+EEK+Y RQ++K L T KNP R+F + +++LFT+ D N + Sbjct: 551 SRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNP--FRYFSKQELRELFTIEDFQNSAT 640
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: ERC6L_MOUSE (DNA excision repair protein ERCC-6-like OS=Mus musculus GN=Ercc6l PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.373e-19 Identity = 47/85 (55.29%), Postives = 62/85 (72.94%), Query Frame = 3 Query: 15 RVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFL---TNKILKNPQQRRFFKARNMKDLFTLND 260 RV+IFDP WNP+TD QA +R +RIGQK++V VYRLIT GT+EEK+Y RQ++K L T KNP R+F + +K+LFT+ D Sbjct: 553 RVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNP--FRYFTKQELKELFTVGD 635
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: ERC6L_HUMAN (DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.405e-19 Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 3 Query: 15 RVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFL---TNKILKNPQQRRFFKARNMKDLFTLND 260 RV+IFDP WNP+TD QA +R +RIGQK++V VYRLIT GT+EEK+Y RQ++K L T KNP R+F + +++LFT+ D Sbjct: 550 RVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNP--FRYFSKQELRELFTIED 632
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: ERC6L_DANRE (DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 7.514e-19 Identity = 46/86 (53.49%), Postives = 62/86 (72.09%), Query Frame = 3 Query: 12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFL---TNKILKNPQQRRFFKARNMKDLFTLND 260 NRV+IFDP WNP+TD QA +RA+RIGQ ++V +YRLIT GT+EEK+Y RQ++K L T KNP R+F + +++LF L D Sbjct: 564 NRVVIFDPSWNPATDAQAVDRAYRIGQTENVIIYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNP--FRYFSKQELRELFKLED 647
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: RAD54_SCHPO (DNA repair protein rhp54 OS=Schizosaccharomyces pombe GN=rhp54 PE=1 SV=2) HSP 1 Score: 90.8929 bits (224), Expect = 6.361e-18 Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 3 Query: 12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLND 260 NR+I+FDPDWNP+ D QA R WR GQK+D VYR I GTIEEK++ RQ +K L++ ++ Q R F N++ LF LND Sbjct: 700 NRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDEAQDVERHFSLDNLRQLFQLND 783
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: RAD54_CHICK (DNA repair and recombination protein RAD54-like (Fragment) OS=Gallus gallus GN=RAD54L PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.033e-17 Identity = 39/84 (46.43%), Postives = 58/84 (69.05%), Query Frame = 3 Query: 12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLND 260 NR+++FDPDWNP+ D QA R WR GQK+ +YRL++ GTIEEK++ RQ +K L++ ++ Q R F +K+LF+LN+ Sbjct: 575 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDEEQDVERHFSLGELKELFSLNE 658
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: RAD54_MOUSE (DNA repair and recombination protein RAD54-like OS=Mus musculus GN=Rad54l PE=2 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 2.046e-16 Identity = 39/84 (46.43%), Postives = 58/84 (69.05%), Query Frame = 3 Query: 12 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLND 260 NR+++FDPDWNP+ D QA R WR GQK+ +YRL++ GTIEEK++ RQ +K L++ ++ Q R F +K+LFTL++ Sbjct: 586 NRLVMFDPDWNPANDEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKELFTLDE 669 The following BLAST results are available for this feature:
BLAST of CX295574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 47
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295574 ID=CX295574; Name=CX295574; organism=Citrus clementina; type=EST; length=662bpback to top |