CX295772
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RK191_ARATH (50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana GN=At4g17560 PE=2 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 3.338e-47 Identity = 111/225 (49.33%), Postives = 133/225 (59.11%), Query Frame = 3 Query: 18 LPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSTKPI---GWNLGFFVNAQVKDSFVVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRKPRVKLGDIMGILNKRAIEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683 LPQALH IPR+ TQ SK LGFS+ LS P + +SVS + G GF ++ +V++ F+VR RKPR+KLGD+MGILN++AIE +E RP+P+IRTGD+VEIKLEVPEN+RRLSIYKGIVMSRQN VEIVFP+YSPNIKEIKVVSHRKVRRARLYYLR+ Sbjct: 8 LPQALHMIPRNPTQS--SKNLGFSSFLSCAPSMDSRISVSRLSLNHPGSKFGFSLDTRVRNEFIVRAEEGNTEAESEEFVAEIADTEGNVEEVVEAKPT--------------RKPRIKLGDVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRD 216
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RK192_ARATH (50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana GN=At5g47190 PE=2 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 1.005e-43 Identity = 107/228 (46.93%), Postives = 130/228 (57.02%), Query Frame = 3 Query: 9 SQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSTKPIGW---NLGFFVNAQVKDSFVVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRKPRVKLGDIMGILNKRAIEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683 S +LPQALH IPR T SK LG S++L R V+ +SVS + N GF ++++ + F+ + P K RVKLGDIMG+LNK+AIE +E+ RP+P +RTGD+VEIKLEVPEN+RRLSIYKGIVMSRQN VEIVFP+YSPNIKEIKVVSHRKVRRARLYYLR+ Sbjct: 5 SHLLPQALHMIPR--TPSFSSKNLGVSSILPRASSVNSRLSVSRVFLNHSSSNFGFAIDSKKRKEFIAKAEESTEGETEAVVENAVETEAEGEGEATVAAEEAKP----------PWKTRVKLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRD 220
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RK19_SPIOL (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2) HSP 1 Score: 158.303 bits (399), Expect = 3.699e-38 Identity = 104/234 (44.44%), Postives = 126/234 (53.85%), Query Frame = 3 Query: 9 SQVLPQALHWIPRS-STQCIP-SKRLGFSTVLSRGPFVSHGVS-------VSTKPIGWNLGFFVNAQVKDSFVVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRKPRVKLGDIMGILNKRAIEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683 S+VLPQAL IP + S QC P K+LGF +R +S S+ N + ++SFVVR PR+ RVKLGDIMGILNK+A+ A+E RP+P IRTGD+V+I+LEVPEN+RRLS+YKGIV+SRQN VEIVFPLYSPNIKEIKVVSHRKVR+ARLYYLR+ Sbjct: 3 SKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSFPARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERP------------PRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRD 224
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_MOOTA (50S ribosomal protein L19 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplS PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13 Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 3 Query: 402 IEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683 +E + IPD R GD V + ++V E NR R+ I++G+V+ R+ VE +FPL+SP ++ I+VV H KVRRA+LYYLRE Sbjct: 7 LEKEQLRTDIPDFRPGDTVRVHVKVVEGNRERIQIFEGVVIGRRGRGINETFTVRRVSYGVAVERIFPLHSPRLERIEVVRHGKVRRAKLYYLRE 101
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_CORJK (50S ribosomal protein L19 OS=Corynebacterium jeikeium (strain K411) GN=rplS PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13 Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = 3 Query: 378 MGILNKRAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683 M IL+K ++A++ IP+ R GD +++ ++V E ++ RL +++G+V+ RQN VE FP++SPNI I V+S KVRRA+LYYLRE Sbjct: 1 MHILDK--VDAAQLRDDIPEFRAGDTLDVHVKVIEGSKSRLQVFRGVVIRRQNSGIRETFTIRKVSFGIGVERTFPVHSPNIDRIDVLSRGKVRRAKLYYLRE 101
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_MAGSA (50S ribosomal protein L19 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplS PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13 Identity = 40/105 (38.10%), Postives = 60/105 (57.14%), Query Frame = 3 Query: 372 DIMGILNKRAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683 +I+ L K IE ++R +P GD +++ ++V E NR R+ Y+G+ ++R+N VE +FPLYSPNI I+VV VRRA+LYYLR+ Sbjct: 3 NIIEQLEKEQIEKLTADRGVPSFAPGDTLKVNVKVIEGNRERVQAYEGVCIARKNDGLNSSFVVRKISYGEGVERIFPLYSPNIASIEVVRRGDVRRAKLYYLRD 107
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_LACLS (50S ribosomal protein L19 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rplS PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12 Identity = 36/95 (37.89%), Postives = 58/95 (61.05%), Query Frame = 3 Query: 399 AIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 680 +I A++ IPD R GD V + +V E R R+ I++G+V++R+N VE +FP+++P +++I+V+ H KVRRA+LYYLR Sbjct: 6 SINAAQLRTDIPDFRPGDTVRVHAKVVEGTRERIQIFEGVVIARKNSGINETYTVRKISNGVGVERIFPVHTPRVEKIEVIRHGKVRRAKLYYLR 100
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_LACLM (50S ribosomal protein L19 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rplS PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12 Identity = 36/95 (37.89%), Postives = 58/95 (61.05%), Query Frame = 3 Query: 399 AIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 680 +I A++ IPD R GD V + +V E R R+ I++G+V++R+N VE +FP+++P +++I+V+ H KVRRA+LYYLR Sbjct: 6 SINAAQLRTDIPDFRPGDTVRVHAKVVEGTRERIQIFEGVVIARKNSGINETYTVRKISNGVGVERIFPVHTPRVEKIEVIRHGKVRRAKLYYLR 100
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_LACLA (50S ribosomal protein L19 OS=Lactococcus lactis subsp. lactis GN=rplS PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12 Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 3 Query: 399 AIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 680 +I A++ IPD R GD V + +V E R R+ +++G+V++R+N VE +FP+++P +++I+V+ H KVRRA+LYYLR Sbjct: 6 SINAAQLRTDIPDFRPGDTVRVHAKVVEGTRERIQMFEGVVIARKNSGINETYTVRKISNGVGVERIFPVHTPRVEQIEVIRHGKVRRAKLYYLR 100
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_ALKMQ (50S ribosomal protein L19 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplS PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12 Identity = 34/97 (35.05%), Postives = 59/97 (60.82%), Query Frame = 3 Query: 396 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683 + I+A++ ++ I D TGD +++ + + E R R+ +++GIV+ RQ VE FP++SP I++I++V H KVRRAR++YLR+ Sbjct: 5 KGIDAAQLKKDIIDFNTGDTIKVHVRIKEGTRERIQVFEGIVIKRQGGGIAETFTVRRISYGVGVERTFPVHSPKIEKIEIVKHGKVRRARIFYLRD 101 The following BLAST results are available for this feature:
BLAST of CX295772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 50
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295772 ID=CX295772; Name=CX295772; organism=Citrus clementina; type=EST; length=707bpback to top |