CX296321
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 4.101e-45 Identity = 83/99 (83.84%), Postives = 95/99 (95.96%), Query Frame = -3 Query: 247 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPS 543 PNPKAGTVT NIPQAIEEFKKGKVE+RADKTGIVHIPFGK +F+E+DLLINFLAA+KS+E NKPKGAKGVYWKSA+ICSSMGPSI+LNI+EM+D+K P+ Sbjct: 246 PNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTEEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPT 344
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_SPIOL (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 3.593e-41 Identity = 79/100 (79.00%), Postives = 87/100 (87.00%), Query Frame = -3 Query: 244 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSN 543 P PKAGTVT N+ QA+EEFKKGKVE+R DKTGIVHIPFGK +F E+DLLIN A IKS+E NKP GAKGVYWKSA+I SSMGPSIRLNI+EMLDYK PSN Sbjct: 252 PTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN 351
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_RHDSA (50S ribosomal protein L1, chloroplastic OS=Rhodomonas salina GN=rpl1 PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 2.185e-30 Identity = 62/94 (65.96%), Postives = 76/94 (80.85%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 P+PK+GTVT +I +AI+EFKKGK+EYRADK+GIVHI FGK DFS +DLL N A +SI+ N+P G KG YWKS YICS+MGPSI+L+I E D Sbjct: 137 PSPKSGTVTADIKEAIDEFKKGKLEYRADKSGIVHILFGKTDFSVEDLLANLEAVQESIDKNRPSGVKGRYWKSFYICSTMGPSIQLDISEFRD 230
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_GUITH (50S ribosomal protein L1, chloroplastic OS=Guillardia theta GN=rpl1 PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 2.185e-30 Identity = 61/94 (64.89%), Postives = 77/94 (81.91%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 P+PK+GTVT+++ AIEEFKKGK+EYRADK+GIVHI FGK +FS +DLL+N A +SI+ N+P G KG YWKS YICS+MGPSI+L+I E D Sbjct: 137 PSPKSGTVTSDVKSAIEEFKKGKLEYRADKSGIVHISFGKTNFSVNDLLLNLEAVQESIDKNRPAGVKGKYWKSFYICSTMGPSIQLDISEFRD 230
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_THEEB (50S ribosomal protein L1 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplA PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 4.120e-29 Identity = 57/97 (58.76%), Postives = 79/97 (81.44%), Query Frame = -3 Query: 253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543 P+PKAGTVT ++PQAI+EFK GKVE+RAD++GIVH+ FGKA FS +DLL+N A +SI+ N+P GAKG YW+S Y+ ++MGPSI+++I + + KL Sbjct: 137 PSPKAGTVTFDLPQAIQEFKAGKVEFRADRSGIVHVLFGKASFSAEDLLVNLKALQESIDRNRPSGAKGRYWRSVYVAATMGPSIQVDINALRELKL 233
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ANAVT (50S ribosomal protein L1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplA PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 4.556e-28 Identity = 56/97 (57.73%), Postives = 76/97 (78.35%), Query Frame = -3 Query: 253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543 P+PK GTVT +I AI EFK GK+E+RAD+TGIVH+ FGKA FS +DLL+N A ++I+ N+P GAKG YW++ Y+ ++MGPSIR++I + DYKL Sbjct: 138 PSPKGGTVTFDIASAIAEFKAGKLEFRADRTGIVHVMFGKASFSPEDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKL 234
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_MICAN (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) GN=rplA PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 5.950e-28 Identity = 55/97 (56.70%), Postives = 76/97 (78.35%), Query Frame = -3 Query: 253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543 P+PK GTVTT++ AI EFK GK+E+RAD+TGIVH+ FGKA FS +DLL+N A ++++ N+P GAKG YW++ Y+ SSMGPSI+++I + D KL Sbjct: 138 PSPKGGTVTTDLTGAIAEFKAGKLEFRADRTGIVHVQFGKASFSAEDLLVNLKALQETVDRNRPSGAKGRYWRTVYVSSSMGPSIQVDISALRDLKL 234
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ANASP (50S ribosomal protein L1 OS=Anabaena sp. (strain PCC 7120) GN=rplA PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 5.950e-28 Identity = 55/97 (56.70%), Postives = 76/97 (78.35%), Query Frame = -3 Query: 253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543 P+PK GTVT ++ AI EFK GK+E+RAD+TGIVH+ FGKA FS +DLL+N A ++I+ N+P GAKG YW++ Y+ ++MGPSIR++I + DYKL Sbjct: 138 PSPKGGTVTFDVASAIAEFKAGKLEFRADRTGIVHVMFGKASFSPEDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKL 234
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ACAM1 (50S ribosomal protein L1 OS=Acaryochloris marina (strain MBIC 11017) GN=rplA PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.015e-27 Identity = 57/97 (58.76%), Postives = 74/97 (76.29%), Query Frame = -3 Query: 253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543 P+PKAGTVT ++PQAIEEFK GK+E+RAD+TGIVH+ FGKA FS DLL N A +I+ N+P GAKG YW+S Y+ ++MGPSI ++I + D L Sbjct: 138 PSPKAGTVTFDLPQAIEEFKAGKLEFRADRTGIVHVMFGKAKFSAQDLLENLKALQDTIDRNRPSGAKGRYWRSLYVSATMGPSIEVDISSLRDLNL 234
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_PORYE (50S ribosomal protein L1, chloroplastic OS=Porphyra yezoensis GN=rpl1 PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.325e-27 Identity = 52/93 (55.91%), Postives = 75/93 (80.65%), Query Frame = -3 Query: 265 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 543 P+PKAGTVT ++ +A+ EFK GKVEYR D+TGI+H+PFGK+ FS++DL++N +SI+ NKP GAKG YWK+ ++ S+MGPSI+++I +L Sbjct: 137 PSPKAGTVTLDVAKAVNEFKGGKVEYRVDRTGIIHVPFGKSSFSQEDLVLNLQTIKESIDRNKPSGAKGKYWKTFFLSSTMGPSIQIDITSLL 229 The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bpback to top |