CX296525
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 6.414e-34 Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 3 Query: 3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224 QDEAVKAIS AIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL Sbjct: 611 QDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 684
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 1.866e-33 Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 3 Query: 3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224 QDEAV+AIS AIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL Sbjct: 611 QDEAVQAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 684
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 4.157e-33 Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 3 Query: 3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224 QDEAVKAIS AIRRARVGLKNPNRPIASFIFSGPTGVGKSELAK+LA YYFGSEEAMIRLDMSEFMERHTVSKL Sbjct: 614 QDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKSLATYYFGSEEAMIRLDMSEFMERHTVSKL 687
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 1.210e-32 Identity = 71/74 (95.95%), Postives = 71/74 (95.95%), Query Frame = 3 Query: 3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224 QDEAVKAIS AIRRARVGLKNPNRPIASFIF GPTGVGKSELAKALAAYYFG EEAMIRLDMSEFMERHTVSKL Sbjct: 559 QDEAVKAISRAIRRARVGLKNPNRPIASFIFFGPTGVGKSELAKALAAYYFGCEEAMIRLDMSEFMERHTVSKL 632
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 5.082e-31 Identity = 65/74 (87.84%), Postives = 71/74 (95.95%), Query Frame = 3 Query: 3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224 QDEAV A+S AIRRARVGLKNPNRPIASFIFSGPTGVGK+EL KALA+Y+FGSEEAM+RLDMSE+MERHTVSKL Sbjct: 514 QDEAVVAVSKAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEEAMVRLDMSEYMERHTVSKL 587
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 4.302e-30 Identity = 63/74 (85.14%), Postives = 71/74 (95.95%), Query Frame = 3 Query: 3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224 Q+EAV A+S AIRRARVGLKNPNRPIASFIFSGPTGVGK+EL KA+A+Y+FGSEEAM+RLDMSE+MERHTVSKL Sbjct: 547 QNEAVIAVSKAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKAMASYFFGSEEAMVRLDMSEYMERHTVSKL 620
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 5.619e-30 Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 3 Query: 3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224 QDEAV A+S AIRRARVGLKNPNRPIASFIFSGPTGVGK+EL KALA+Y+FGSE +MIRLDMSE+MERHTVSKL Sbjct: 517 QDEAVVAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEASMIRLDMSEYMERHTVSKL 590
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 7.338e-30 Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 3 Query: 3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224 QDEAV A+S AIRRARVGLKNPNRPIASFIFSGPTGVGK+EL KALA+Y+FGSE +MIRLDMSE+MERHTVSKL Sbjct: 517 QDEAVIAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEASMIRLDMSEYMERHTVSKL 590
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: ERD1_ARATH (ERD1 protein, chloroplastic OS=Arabidopsis thaliana GN=ERD1 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 1.295e-26 Identity = 57/74 (77.03%), Postives = 68/74 (91.89%), Query Frame = 3 Query: 3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224 QDEAV AIS A++R+RVGLK+P+RPIA+ +F GPTGVGK+EL KALAA YFGSEE+M+RLDMSE+MERHTVSKL Sbjct: 632 QDEAVAAISRAVKRSRVGLKDPDRPIAAMLFCGPTGVGKTELTKALAANYFGSEESMLRLDMSEYMERHTVSKL 705
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_ODOSI (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Odontella sinensis GN=clpC PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 3.191e-25 Identity = 53/74 (71.62%), Postives = 67/74 (90.54%), Query Frame = 3 Query: 3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224 Q A+ ++S AIRRARVGL+NP+RPIASFIF+GPTGVGK+EL KAL+ Y FG+E++MIRLDMSE+ME+HTV+KL Sbjct: 528 QHHAIVSVSKAIRRARVGLRNPDRPIASFIFAGPTGVGKTELTKALSEYMFGNEDSMIRLDMSEYMEKHTVAKL 601 The following BLAST results are available for this feature:
BLAST of CX296525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 194
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296525 ID=CX296525; Name=CX296525; organism=Citrus clementina; type=EST; length=224bpback to top |