CX297679

Overview
NameCX297679
Unique NameCX297679
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig302 contig Ccv1_Contig302:435..1153. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.823e-39
Identity = 75/107 (70.09%), Postives = 85/107 (79.44%), Query Frame = 3
Query:    6 YFLQALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 326
            YF  ++PS+LQ TK+MAVVDTLSTHSPDEEY+GERQQP IW+GD EI +AF+ FS             N DPSRRNRCGAGVLPYEL+ PSSEPGVTC+GVPNSVSI
Sbjct:  820 YFFSSMPSLLQTTKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVDAFYGFSAEIGRIEKEIDKRNRDPSRRNRCGAGVLPYELMAPSSEPGVTCRGVPNSVSI 926          
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.929e-38
Identity = 73/107 (68.22%), Postives = 85/107 (79.44%), Query Frame = 3
Query:    6 YFLQALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 326
            Y+  ++PS+ Q +K+MAVVDTLSTHSPDEEY+GERQQP IW+GD EI EAF+ F+             N+DP RRNRCGAGVLPYELLVPSSEPGVTC+GVPNSVSI
Sbjct:  813 YYFSSMPSLAQTSKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVEAFYGFAAEIGRIEKEIEKRNADPDRRNRCGAGVLPYELLVPSSEPGVTCRGVPNSVSI 919          
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.711e-28
Identity = 62/107 (57.94%), Postives = 73/107 (68.22%), Query Frame = 3
Query:    6 YFLQALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 326
            +FL ALPS+ Q T +M V+DTLSTHS DEEYLGER     W+ D     A  EF+             N+DPSRRNRCGAGVLPYEL+ PSS PG+TC+GVPNSV+I
Sbjct:  794 FFLSALPSLTQTTTFMTVIDTLSTHSADEEYLGERPDE-AWTADPAALAAAREFAADVRRAEEEIERRNADPSRRNRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 899          
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.541e-28
Identity = 64/109 (58.72%), Postives = 76/109 (69.72%), Query Frame = 3
Query:    6 YFLQALPSVLQATKYMAVVDTLSTHSPDEEYLGE-RQQPWI-WSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 326
            +FL A+P VL+ATK+MAVVDTLSTHSPDEEYLGE R +  + W+ D     A   F+             N+D  R+NRCGAGVLPYELL PSS PGVTC+GVPNS+SI
Sbjct:  810 FFLNAMPGVLEATKFMAVVDTLSTHSPDEEYLGEGRDEGGVPWTADEAAVAAHGMFAADVRRAEETIERRNADHGRKNRCGAGVLPYELLAPSSPPGVTCRGVPNSISI 918          
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 55/105 (52.38%), Postives = 72/105 (68.57%), Query Frame = 3
Query:   12 LQALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 326
            LQ+LPS +QA K MA +D LS+HSPDEEY+GE  +P  W  +  +  AF +FSG            N++P  +NRCGAG++PYELL P SEPGVT +G+PNS+SI
Sbjct:  793 LQSLPSQMQAIKVMATLDILSSHSPDEEYMGEYAEP-AWLAEPMVKAAFEKFSGRLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKPFSEPGVTGRGIPNSISI 896          
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 54/107 (50.47%), Postives = 69/107 (64.49%), Query Frame = 3
Query:    9 FLQALPSVLQATKYMAVVDTLSTHSPDEEYLGE-RQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 326
            FL +LP+ LQATK MAV +TLSTHSPDEEYL E R+    W  D ++ + F +FS             N D   +NR GAG+ PYELL+P+S  GVT +G+PNS+SI
Sbjct:  811 FLGSLPTQLQATKVMAVQETLSTHSPDEEYLIELREVQRHWFQDEQVVKYFNKFSEELVKIEKTINERNKDKKLKNRTGAGMPPYELLLPTSPHGVTGRGIPNSISI 917          
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 3
Query:   15 QALPSVLQATKYMAVVDTLSTHSPDEEYLG-ERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 326
            +  PS +QAT  MAV+D LSTHS DEEYLG E+ +PW  + D  +  A+  F+             N D   +NRCGAG+LPY+L+ P S+ GVT  G+PNS SI
Sbjct:  839 ECFPSQVQATVVMAVLDVLSTHSTDEEYLGGEQTRPW--NSDAAVQAAYAGFTARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDAGVTGMGIPNSTSI 941          
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 48/105 (45.71%), Postives = 64/105 (60.95%), Query Frame = 3
Query:   15 QALPSVLQATKYMAVVDTLSTHSPDEEYLG-ERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 326
            +  PS +QAT  MAV+D LS+HS DEEYLG E+ +PW  + D  +  A+  F+             N D   +NRCGAG+LPY+L+ P S+ GVT  G+PNS SI
Sbjct:  822 ECFPSQVQATVVMAVLDVLSSHSTDEEYLGGEQTRPW--NSDAAVQAAYDGFAARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDSGVTGMGIPNSTSI 924          
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.262e-17
Identity = 50/105 (47.62%), Postives = 63/105 (60.00%), Query Frame = 3
Query:   12 LQALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 326
            L+  PS  QAT  M  +D LSTHSPDEEY+GE+Q+   W+ +  I  AF  F G            N + + +NR GAGV+ YELL P+SE GVT  GVP S+SI
Sbjct:  793 LKTYPSQKQATLVMVTLDLLSTHSPDEEYIGEQQEA-SWANEPVINAAFERFKGKLQYLEGVIDERNVNITLKNRAGAGVVKYELLKPTSEHGVTGMGVPYSISI 896          
BLAST of CX297679 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 49/111 (44.14%), Postives = 62/111 (55.86%), Query Frame = 3
Query:    9 FLQALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSGXXXXXXXXXXXXNSDPSRRNRCGAGVLPYELLVPSSEPGVTCK-----GVPNSVSI 326
            +L  LPS LQ    MA +D LS+H+ DEEY+G  Q+P  W  DGE+ +AF  F              N D SRRNR GAGV+PY LL P +   +  K     G+PNS+SI
Sbjct:  823 WLDTLPSQLQTVMVMATLDLLSSHASDEEYMGTHQEP-AWQRDGEVDKAFQVFQKKMRDIAEQVEEWNKDDSRRNRHGAGVVPYVLLRPLNGNPMDAKTVMEMGIPNSISI 932          
The following BLAST results are available for this feature:
BLAST of CX297679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
LOX4_ARATH5.823e-3970.09Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX3_ARATH4.929e-3868.22Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX5_ORYSJ2.711e-2857.94Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX6_ORYSJ3.541e-2858.72Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX23_HORVU1.066e-2452.38Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOX6_ARATH4.635e-2050.47Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOXC2_ORYSJ8.741e-1946.67Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOXC1_ORYSJ3.322e-1845.71Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX2_ARATH1.262e-1747.62Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX22_HORVU2.380e-1644.14Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]

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Properties
Property NameValue
Genbank descriptionC06004B01SK RindPdig24 Citrus clementina cDNA clone C06004B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297679 ID=CX297679; Name=CX297679; organism=Citrus clementina; type=EST; length=719bp
GAGGGTATTTCCTGCAGGCATTGCCAAGCGTACTCCAAGCGACCAAATAC
ATGGCCGTGGTAGACACATTGTCTACACATTCGCCGGACGAGGAGTACCT
CGGGGAACGACAACAGCCGTGGATTTGGTCCGGCGATGGTGAGATAACCG
AGGCATTTTTTGAATTTTCTGGGGAGATAAGACGGATAGAAAAAGAAATC
GAGAAAAGAAACAGTGATCCAAGCCGGAGGAACCGGTGCGGCGCCGGCGT
TTTACCATATGAGCTACTGGTACCGAGTTCGGAACCTGGAGTAACATGCA
AAGGTGTTCCAAATAGTGTATCAATATGAGCCCAAAGGGAGCTCACATGG
TCATGTTTGACCAACTTTGGTATATAACTTAAATATTAGATATTTGTAGT
CTGTAGAGATGCCGGCTATAAATGGTCATTATACCAATCAAATATTTTGT
ACCAAGCTAGATTCTAAGTAATTATGTGCCATTGAGAGCACATTAAACTT
AGAATTGTATATGCAATTGAGTATACAAGAATAATGTTTGTAGTTACCGT
ATCATATAATTCGTGGTGTAATAAGTAGACTTTTTCCTCGTGCCGAATTC
GGCACGAGGGTTCAGTACTCAACATCAAACAATCGATGCAGCAAAAGCCA
ACTGTGTGAATCTTCTGGAGTCAACAAGAAAGAACTAGAATCCCAGATGA
ATGAATTAGCTCTGAAGGA
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