CX297732

Overview
NameCX297732
Unique NameCX297732
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length772
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12011 contig Ccv1_Contig12011:520..1291. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297732 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.048e-40
Identity = 77/112 (68.75%), Postives = 98/112 (87.50%), Query Frame = 1
Query:   91 MVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDKVS 426
            MVN+AAASFR+K+N+LL+MAHD+TVG DFRLFF+VV  LWLLSAIGSY S  TL YIGT+LS+T+PALYS+++++VD+ CG IH+ +S HYK+VDENVISR+  +LSKDK S
Sbjct:  115 MVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSLSKDKDS 226          
BLAST of CX297732 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.745e-15
Identity = 46/109 (42.20%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  109 ASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDE----NVISRIPR-TLSKDK 420
            +  R++IN  L +  +I  GKD + F  V+A LW+LS IGS ++F TL Y  T+L  T+P LY ++E +VD Y     + I + Y V+DE     VIS+IPR  L+K K
Sbjct:  148 SGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKVISKIPRGALNKKK 256          
BLAST of CX297732 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.745e-15
Identity = 41/105 (39.05%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  106 AASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDK 420
            A+  R++IN  +    +I  G+D + F   +A LW+LS +G  +SF TLAYI  +L  TVP  Y ++E +VD Y       + + Y V+D  V S+IPR   KDK
Sbjct:  164 ASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSKIPRGPLKDK 268          
BLAST of CX297732 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.633e-15
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 1
Query:  106 AASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDK 420
            A SF V+ N +L    D+  G+D  LFF     L+++S IG+YF+F  L +IG +   T+P +Y  +E  VD   G + + + + YK VD NV+S+IPR   K+K
Sbjct:  118 ARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKKVDTNVLSKIPRGTVKNK 222          
BLAST of CX297732 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.520e-14
Identity = 39/105 (37.14%), Postives = 61/105 (58.10%), Query Frame = 1
Query:  106 AASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDK 420
            A+S R ++N   ++   I +G+D + F  VV  LW++S +G++F+F TL YI  ++  TVP LY + E +VD       K + + Y V DE V+S+IP    K K
Sbjct:  147 ASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLSKIPIASLKAK 251          
BLAST of CX297732 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.615e-14
Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = 1
Query:  109 ASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDKV 423
            ++ R ++N   ++   I +G+D + F  VV  LW++S +G++F+F TL YI  ++  TVP LY + E +VD       K + +HY V DE V+S++P    K K+
Sbjct:  148 SALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLSKLPVASLKAKL 252          
BLAST of CX297732 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.333e-14
Identity = 33/97 (34.02%), Postives = 61/97 (62.89%), Query Frame = 1
Query:  106 AASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRI 396
            A + RV IN +L +A +I VG++ +  F+V   LW +S +G++ +F T+ Y+G +LS+ +P LY R++  +D    + H+ I   Y+ +DE ++ +I
Sbjct:   93 ADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDERLLQKI 189          
BLAST of CX297732 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.134e-13
Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 1
Query:   91 MVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSK 414
            +V   A+  R++IN    +  DI  G+D + F  V+A LW+LS +GS  +F TL YI T+L  T+P LY ++E +VD +     + I + Y   D  V+S++   + K
Sbjct:  138 VVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSKVMSKIPK 245          
BLAST of CX297732 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.753e-13
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 1
Query:  106 AASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDK 420
            A+  R++IN       +I  G+D + F   +A LW+LS +G  F+F TLAYI  +L  TVP  Y ++E +VD         + + Y V+DE V+S+IP    K+K
Sbjct:  168 ASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSKIPLGPLKNK 272          
BLAST of CX297732 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.024e-12
Identity = 35/99 (35.35%), Postives = 57/99 (57.58%), Query Frame = 1
Query:  124 KINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSKDK 420
            KIN+ ++  +DI+ GKDFRL F  V  LW+LS +G+YFS  TL YI  +   T+P LY ++E  +        + + +     +  VI++IP+  +K +
Sbjct:  114 KINWFIIKLYDISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLYEQYEEELTYAASKSGRDMKKLLNKFNSKVINKIPKAQAKTR 212          
The following BLAST results are available for this feature:
BLAST of CX297732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RTNLP_ARATH2.048e-4068.75Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]
RTNLD_ARATH1.745e-1542.20Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH1.745e-1539.05Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH6.633e-1539.05Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH2.520e-1437.14Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH5.615e-1435.24Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLJ_ARATH7.333e-1434.02Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]
RTNLC_ARATH2.134e-1335.19Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLA_ARATH4.753e-1337.14Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLN_ARATH4.024e-1235.35Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionC06004F07SK RindPdig24 Citrus clementina cDNA clone C06004F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297732 ID=CX297732; Name=CX297732; organism=Citrus clementina; type=EST; length=772bp
AGGATCGTTTTGATGTTCTTTCGTGCCAATTTTGCTGCTTTTAGAAATAA
ACAACTAGAGTCATTACCTGAGTTGGAGGTATCGGAGGAAATGGTTAATA
ATGCTGCAGCATCATTTCGTGTTAAAATAAACTATCTGCTCCTTATGGCT
CACGACATCACTGTTGGCAAGGATTTTAGACTCTTTTTCCAGGTGGTGGC
CTATCTTTGGCTCCTGTCTGCCATTGGTAGCTACTTCTCATTCTTCACTC
TAGCCTATATCGGAACTCTCTTATCCATTACAGTTCCTGCATTGTACAGC
AGATTTGAAGCACGTGTGGATAGATATTGCGGGATGATCCATAAGAGTAT
ATCTCAGCACTACAAAGTAGTGGACGAAAATGTTATTAGTCGAATTCCAA
GGACTTTATCCAAGGACAAAGTTTCATAACTTTGATATTTTTCTAACAGA
TGACAGTTTATTAAAAAGGAAAAACAGAACCATAACGGTATGAGTGAATG
TCGCAGAATTTTGGAGCATCGAATTGATGCAGAGTTGTCAAAGTTTCTCT
TCCCCTTGGTAGCCAACTATTTTGAGGTTTCAGTTGCTCTTGTAAGACCA
TTTTGTGATGTTTCATTTCCGTTGGACCAGAATGATTTGTTTTCCAATGT
TATCTTCATTGAAACTTGAACCAGTAAACTTGCAATCCGCCTAGGCCGCA
CATCGACATAAGGAGAAAATATTAGCCGGCATGTTCAAAAATGCATTCTG
AAGTTTTGCTTTCCTATACATA
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