CX297883

Overview
NameCX297883
Unique NameCX297883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length396
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11876 contig Ccv1_Contig11876:1066..1460. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297883 vs. ExPASy Swiss-Prot
Match: PAPA5_CARPA (Cysteine proteinase (Fragment) OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.643e-21
Identity = 41/45 (91.11%), Postives = 45/45 (100.00%), Query Frame = 2
Query:   14 IRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTIAA 148
            IRLKEKPYW+IKNSWGE+WGENGYYKICRGRN+CGVDSMVST+AA
Sbjct:   46 IRLKEKPYWVIKNSWGENWGENGYYKICRGRNICGVDSMVSTVAA 90          
BLAST of CX297883 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.034e-20
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 2
Query:   14 IRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTIAAA 151
            IRLKEKPYWIIKNSWG++WGE GYYKICRGRNVCGVDSMVST+AAA
Sbjct:  314 IRLKEKPYWIIKNSWGQNWGEQGYYKICRGRNVCGVDSMVSTVAAA 359          
BLAST of CX297883 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.704e-20
Identity = 39/46 (84.78%), Postives = 44/46 (95.65%), Query Frame = 2
Query:   17 RLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTIAAAV 154
            R KEKPYWIIKNSWGE+WGENG+YKIC+GRN+CGVDSMVST+AA V
Sbjct:  318 RFKEKPYWIIKNSWGETWGENGFYKICKGRNICGVDSMVSTVAATV 363          
BLAST of CX297883 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.704e-20
Identity = 39/44 (88.64%), Postives = 44/44 (100.00%), Query Frame = 2
Query:   17 RLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTIAA 148
            RLKEKPYWIIKNSWGESWGENG+YKIC+GRN+CGVDS+VST+AA
Sbjct:  315 RLKEKPYWIIKNSWGESWGENGFYKICKGRNICGVDSLVSTVAA 358          
BLAST of CX297883 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.817e-18
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 2
Query:   14 IRLKEKPYWIIKNSWGESWGENGYYKICRG---RNVCGVDSMVSTIAA 148
            IRLK+KPYWIIKNSWGE+WGENGYYKICRG   RN CGVDSMVST++A
Sbjct:  318 IRLKDKPYWIIKNSWGENWGENGYYKICRGSNVRNKCGVDSMVSTVSA 365          
The following BLAST results are available for this feature:
BLAST of CX297883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PAPA5_CARPA4.643e-2191.11Cysteine proteinase (Fragment) OS=Carica papaya PE... [more]
CYSP_PEA1.034e-2091.30Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
RD19A_ARATH6.704e-2084.78Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
A494_ARATH6.704e-2088.64Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
CYSP1_MAIZE2.817e-1883.33Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionC06006C04SK RindPdig24 Citrus clementina cDNA clone C06006C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297883 ID=CX297883; Name=CX297883; organism=Citrus clementina; type=EST; length=396bp
GATTCGGCCGAGGATCAGGTTGAAGGAGAAGCCATACTGGATCATCAAGA
ATTCATGGGGTGAGAGCTGGGGAGAGAACGGATACTACAAAATATGCAGG
GGTCGCAACGTCTGTGGAGTCGATTCCATGGTTTCGACCATAGCTGCTGC
TGTTCGTGACTGACTCCAAGTAAGGAGTAGGTTATAGTAGCAGATACAGG
TCCATTGGATGTTTTGTATATAAAGCATGCGACTTTAATGTTGAAACAAT
TTCCTCAATGCATAAGAAATGATTTCTTATTGCATCTGGGTGTCAAACTG
AAATGTCTCAATTATGTCATTAAGTGGAACTCCTTTGTTGTAAGATTAAG
ACTGTTATCTGACTTTATATAAATTTGGCAAAAAAAAAAAAAAAAA
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