CX297885

Overview
NameCX297885
Unique NameCX297885
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15453 contig Ccv1_Contig15453:202..928. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX297885 vs. ExPASy Swiss-Prot
Match: NIFU2_ARATH (NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 7.033e-72
Identity = 150/221 (67.87%), Postives = 171/221 (77.38%), Query Frame = 1
Query:   34 MQGVVLNPT-YSR-PHQTLDSPSCSRPASKSTKSFFGERVS--LTRWRNPVRHSSCRLLLIRKRGAARRNVIKAVATPDSAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEETGLELNEENIEKVLEEIRPYLVGAAGGSLELVAIDEPIVKVRITGPAAGVMTVRVAVTQ 684
            MQ + LNP   SR P Q +D  S S       +    +R    + R  NP+R    R L  R+    R  V+KAVATPD  +E+PLT EN+ESVLDEIRPYL+SDGGNVALHEIDGN+VR+KLQGACGSCPSS MTMKMGIERRLMEKIPEIVAVE++ DEETGLELNEENIEKVLEEIRPYL+G A GSL+LV I++PIVK+RITGPAAGVMTVRVAVTQ
Sbjct:    1 MQLLTLNPAAISRTPPQAIDPSSSSSLLLPFPQILSSQRALGLVARPCNPLRRGLSRFLSSRQL-FRRSKVVKAVATPDPILEVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGVMTVRVAVTQ 220          
BLAST of CX297885 vs. ExPASy Swiss-Prot
Match: NIFU1_ORYSJ (NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.228e-56
Identity = 120/209 (57.42%), Postives = 149/209 (71.29%), Query Frame = 1
Query:   76 QTLDSPSCSRPA---SKSTKSFFGERVSLTRWRNPVRHSSCRLLLIRKRGAARRN-VIKAVA--TPDSAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEETGLELNEENIEKVLEEIRPYLVGAAGGSLELVAIDEPIVKVRITGPAAGVMTVRVAVTQ 684
            QT   P  +  A   S +T S    +V+   W +    SS    L+      R   V+ A+A   P +A++LPLTA N+ESVLD++RPYL +DGG+VALHEI GNVVRLKLQGACGSCPSS++T+K GIERRLMEKIP++ AVE V D+ETGLELNEEN+EKVL EIRPYL G  GG L+ + I  PIVKVR+TGPAA V TVR+AV++
Sbjct:    2 QTTTVPMAAAAAVAPSTTTSSSASFKVAAYAWSSCRSSSSPATRLVAAPNHQRPPLVVGAIAGLDPVTAVQLPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIERRLMEKIPDVAAVEPVTDKETGLELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSK 210          
BLAST of CX297885 vs. ExPASy Swiss-Prot
Match: NIFU3_ARATH (NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=NIFU3 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.352e-51
Identity = 103/139 (74.10%), Postives = 118/139 (84.89%), Query Frame = 1
Query:  271 LPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEET-GLELNEENIEKVLEEIRPYLVGAAGGSLELVAIDEPIVKVRITGPAAGVMTVRVAVTQ 684
            +PLT EN+E VLDE+RP L++DGGNVALHEIDG VV LKLQGACGSCPSS MT+KMGIE RL +KIPEI++VE   + ET GLELN+ENIEKVL E+RPYL G  GG LELV ID  +VKVR+TGPAAGVMTVRVA+TQ
Sbjct:   82 MPLTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRLRDKIPEIMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGYVVKVRLTGPAAGVMTVRVALTQ 220          
BLAST of CX297885 vs. ExPASy Swiss-Prot
Match: NIFU1_ARATH (NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.638e-21
Identity = 58/143 (40.56%), Postives = 89/143 (62.24%), Query Frame = 1
Query:  259 SAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVA-VESVADEETGLELNEENIEKVLEEIRPYLVGAAGGSLELVAIDEPIVKVRITGPAAGVMTVRVAVTQ 684
            SA    LT +N++ VL+++RP+LISDGGNV +  ++  VV LKLQGAC SCPSS  TM MGIER L EK  + +  +  V DEE   ++  E +   L+ +RP  +   GGS+E+++++     V+  GP +  M ++ A+ +
Sbjct:   79 SAQTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVLKEKFGDALKDIRQVFDEEV-KQITVEAVNAHLDILRP-AIKNYGGSVEVLSVEGEDCVVKYVGPESIGMGIQAAIKE 219          
BLAST of CX297885 vs. ExPASy Swiss-Prot
Match: YUTI_BACSU (Putative nitrogen fixation protein yutI OS=Bacillus subtilis GN=yutI PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.103e-16
Identity = 37/70 (52.86%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  286 ENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 495
            E ++ VLD++RP+L+ DGG+  L ++D  +V+L+L GACGSCPSS +T+K GIER L+E++P +V VE V
Sbjct:   41 EQVQEVLDKLRPFLLRDGGDCELVDVDEGIVKLRLLGACGSCPSSTITLKAGIERALLEEVPGVVEVEQV 110          
BLAST of CX297885 vs. ExPASy Swiss-Prot
Match: NIFU_ANASL (Nitrogen fixation protein nifU (Fragment) OS=Anabaena sp. (strain L31) GN=nifU PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 38/69 (55.07%), Postives = 55/69 (79.71%), Query Frame = 1
Query:  292 IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 495
            I+ VLDE +RP LI+DGG+V L+++DG++V++ LQGACGSCPSS  T+K+ IE RL ++I   + VE+V
Sbjct:   44 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCPSSTATLKIAIESRLRDRINPSLVVEAV 112          
BLAST of CX297885 vs. ExPASy Swiss-Prot
Match: NIFU_ANASP (Nitrogen fixation protein nifU OS=Anabaena sp. (strain PCC 7120) GN=nifU PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 1
Query:  238 KAVATPDSAIELPLTAEN----IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 495
            K    P+S  + PLT       I+ VLDE +RP LI+DGG+V L+++DG++V++ LQGACGSC SS  T+K+ IE RL ++I   + VE+V
Sbjct:  210 KPTNIPNSGQKRPLTNVQKIALIQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRINPSLVVEAV 300          
BLAST of CX297885 vs. ExPASy Swiss-Prot
Match: NIFU_ANAAZ (Nitrogen fixation protein nifU OS=Anabaena azollae GN=nifU PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 1
Query:  238 KAVATPDSAIELPLTAEN----IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 495
            K    P+S  + PLT       I+ VLDE +RP LI+DGG+V L+++DG++V++ LQGACGSC SS  T+K+ IE RL ++I   + VE+V
Sbjct:  210 KPTNIPNSGQKRPLTNVQKIALIQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRINPSLVVEAV 300          
BLAST of CX297885 vs. ExPASy Swiss-Prot
Match: NFU1_DROME (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila melanogaster GN=CG32500 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.336e-13
Identity = 40/96 (41.67%), Postives = 61/96 (63.54%), Query Frame = 1
Query:  280 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADE-ETGLELNEENIEKVLEEIR 561
            T   I+ +LD  IRP +  DGG++     +G VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V DE +  +E   E  EK L+ ++
Sbjct:  178 TVMMIKELLDTRIRPTVQEDGGDIVFMGYEGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDEADRMIESEFERFEKNLKTLK 273          
BLAST of CX297885 vs. ExPASy Swiss-Prot
Match: NFU1_DROPE (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila persimilis GN=GL13432 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 43/107 (40.19%), Postives = 63/107 (58.88%), Query Frame = 1
Query:  280 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEETGLELNE-ENIEKVLEEIRP--YLVGAAGG 588
            T   I+ +LD  IRP +  DGG++     +  VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V D+   +   E E  EK L++  P    VG  GG
Sbjct:  174 TVMMIKELLDTRIRPTVQEDGGDIVFISYENGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDDADRMADKEFERFEKNLKQKEPAGAPVGIGGG 280          
The following BLAST results are available for this feature:
BLAST of CX297885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
NIFU2_ARATH7.033e-7267.87NifU-like protein 2, chloroplastic OS=Arabidopsis ... [more]
NIFU1_ORYSJ9.228e-5657.42NifU-like protein 1, chloroplastic OS=Oryza sativa... [more]
NIFU3_ARATH2.352e-5174.10NifU-like protein 3, chloroplastic OS=Arabidopsis ... [more]
NIFU1_ARATH9.638e-2140.56NifU-like protein 1, chloroplastic OS=Arabidopsis ... [more]
YUTI_BACSU1.103e-1652.86Putative nitrogen fixation protein yutI OS=Bacillu... [more]
NIFU_ANASL7.903e-1555.07Nitrogen fixation protein nifU (Fragment) OS=Anaba... [more]
NIFU_ANASP1.348e-1447.25Nitrogen fixation protein nifU OS=Anabaena sp. (st... [more]
NIFU_ANAAZ1.348e-1447.25Nitrogen fixation protein nifU OS=Anabaena azollae... [more]
NFU1_DROME4.336e-1341.67NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROPE1.262e-1240.19NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]

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Properties
Property NameValue
Genbank descriptionC06006C07SK RindPdig24 Citrus clementina cDNA clone C06006C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297885 ID=CX297885; Name=CX297885; organism=Citrus clementina; type=EST; length=730bp
GATTCGGCCGAGGCGAAGAAATCAAAGAGAAAGATGCAAGGCGTTGTGTT
GAACCCAACTTACAGTCGCCCTCACCAAACCCTAGACTCTCCTTCTTGTT
CTCGTCCTGCCTCTAAGAGTACTAAAAGTTTCTTTGGAGAACGAGTTTCG
CTTACGAGGTGGCGGAATCCGGTGCGTCACAGCTCGTGTCGGTTACTGCT
GATTCGGAAGCGTGGGGCCGCGCGAAGGAACGTCATAAAGGCTGTGGCTA
CTCCTGATTCAGCTATTGAGTTACCTTTAACTGCTGAGAATATTGAAAGT
GTATTGGATGAAATTCGACCATATCTTATATCAGATGGGGGAAATGTGGC
ATTACATGAGATTGATGGCAATGTTGTACGATTGAAGCTACAGGGAGCAT
GTGGGTCTTGTCCCAGTTCTGTTATGACGATGAAGATGGGTATTGAGCGT
CGCTTAATGGAGAAGATCCCCGAGATAGTTGCAGTGGAATCGGTAGCAGA
TGAAGAAACTGGGCTTGAGCTGAATGAAGAAAATATAGAGAAGGTACTTG
AGGAAATCAGGCCCTATCTTGTTGGGGCAGCAGGTGGATCACTTGAACTT
GTGGCAATTGATGAGCCAATAGTTAAAGTTCGAATTACGGGTCCGGCAGC
TGGAGTCATGACTGTTCGTGTGGCTGTTACCCAAAGTTGCGTGAAAAAAT
CCAGCCATTGCAGCAGTTCACTTTCTGTAT
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