CX299906

Overview
NameCX299906
Unique NameCX299906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3756 contig Ccv1_Contig3756:101..591. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSJ (Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 5.268e-56
Identity = 106/117 (90.60%), Postives = 113/117 (96.58%), Query Frame = 1
Query:   34 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 384
            MA+SSFKLEHPLERR AE+ RIREKYPDRIPVIVEKAE++D+PDI KKKYLVPADL+VGQFVYVVRKRIKLSAEKAIF+FVKNTLPPT ALMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSI (Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 5.268e-56
Identity = 106/117 (90.60%), Postives = 113/117 (96.58%), Query Frame = 1
Query:   34 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 384
            MA+SSFKLEHPLERR AE+ RIREKYPDRIPVIVEKAE++D+PDI KKKYLVPADL+VGQFVYVVRKRIKLSAEKAIF+FVKNTLPPT ALMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: ATG8A_ORYSJ (Autophagy-related protein 8A OS=Oryza sativa subsp. japonica GN=ATG8A PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 4.460e-55
Identity = 106/117 (90.60%), Postives = 112/117 (95.73%), Query Frame = 1
Query:   34 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 384
            MA++SFKLEHPLERR AESARIREKY DRIPVIVEKA+KTDVP+I KKKYLVPADL+VGQFVYVVRKRIKLS EKAIFVFVKNTLPPT +LMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MARTSFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: ATG8A_ORYSI (Autophagy-related protein 8A OS=Oryza sativa subsp. indica GN=ATG8A PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 4.460e-55
Identity = 106/117 (90.60%), Postives = 112/117 (95.73%), Query Frame = 1
Query:   34 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 384
            MA++SFKLEHPLERR AESARIREKY DRIPVIVEKA+KTDVP+I KKKYLVPADL+VGQFVYVVRKRIKLS EKAIFVFVKNTLPPT +LMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MARTSFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: ATG8C_ARATH (Autophagy-related protein 8c OS=Arabidopsis thaliana GN=ATG8C PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.298e-54
Identity = 104/117 (88.89%), Postives = 112/117 (95.73%), Query Frame = 1
Query:   34 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 384
            MA SSFKLEHPLERR  ES+RIREKYPDRIPVIVE+AE++DVP+I KKKYLVPADL+VGQFVYVVRKRIKLSAEKAIFVFVKNTLPPT A+MSAIY+ENKDEDGFLYMTYSGENTFG
Sbjct:    1 MANSSFKLEHPLERRQIESSRIREKYPDRIPVIVERAERSDVPNIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTAAMMSAIYDENKDEDGFLYMTYSGENTFG 117          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSJ (Autophagy-related protein 8B OS=Oryza sativa subsp. japonica GN=ATG8B PE=3 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 1.435e-53
Identity = 103/117 (88.03%), Postives = 110/117 (94.02%), Query Frame = 1
Query:   34 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 384
            MAKSSFKL+H LERR AE+ RIREKY DRIPVIVEKAE++D+PDI KKKYLVPADL+VGQFVYVVRKRIKLS EKAIF+FVKNTLPPT ALMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MAKSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSI (Autophagy-related protein 8B OS=Oryza sativa subsp. indica GN=ATG8B PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 1.435e-53
Identity = 103/117 (88.03%), Postives = 110/117 (94.02%), Query Frame = 1
Query:   34 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 384
            MAKSSFKL+H LERR AE+ RIREKY DRIPVIVEKAE++D+PDI KKKYLVPADL+VGQFVYVVRKRIKLS EKAIF+FVKNTLPPT ALMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MAKSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: ATG8A_ARATH (Autophagy-related protein 8a OS=Arabidopsis thaliana GN=ATG8A PE=1 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 4.174e-53
Identity = 102/117 (87.18%), Postives = 111/117 (94.87%), Query Frame = 1
Query:   34 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 384
            MAKSSFK+ +PLE R++ES+RIREKYPDRIPVIVEKA ++DVPDI KKKYLVPADL+VGQFVYVVRKRIKL AEKAIFVFVKNTLPPT ALMSAIYEE+KDEDGFLYMTYSGENTFG
Sbjct:    1 MAKSSFKISNPLEARMSESSRIREKYPDRIPVIVEKAGQSDVPDIDKKKYLVPADLTVGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFG 117          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: ATG8D_ARATH (Autophagy-related protein 8d OS=Arabidopsis thaliana GN=ATG8D PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 2.705e-52
Identity = 101/120 (84.17%), Postives = 111/120 (92.50%), Query Frame = 1
Query:   34 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGWSF 393
            MA SSFK EHPLE+R AE+ARIREKYPDRIPVIVE+AEK+DVPDI +KKYLVPADL+VGQFVYVVRKRIKLS EKAIF+FVKN LPPT A+MSAIYEE+KDEDGFLYM+YSGENTFG  F
Sbjct:    1 MAISSFKHEHPLEKRQAEAARIREKYPDRIPVIVERAEKSDVPDIDRKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLYMSYSGENTFGIFF 120          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: ATG8B_ARATH (Autophagy-related protein 8b OS=Arabidopsis thaliana GN=ATG8B PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 3.533e-52
Identity = 100/120 (83.33%), Postives = 110/120 (91.67%), Query Frame = 1
Query:   34 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGWSF 393
            M K+SFKL +PLE R+AES RIR KYP+R+PVIVEKA ++DVPDI KKKYLVPADL++GQFVYVVRKRIKL AEKAIFVFVKNTLPPT ALMSAIYEE+KDEDGFLYMTYSGENTFG SF
Sbjct:    1 MEKNSFKLSNPLEMRMAESTRIRAKYPERVPVIVEKAGQSDVPDIDKKKYLVPADLTIGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFGGSF 120          
The following BLAST results are available for this feature:
BLAST of CX299906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ATG8C_ORYSJ5.268e-5690.60Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8C_ORYSI5.268e-5690.60Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8A_ORYSJ4.460e-5590.60Autophagy-related protein 8A OS=Oryza sativa subsp... [more]
ATG8A_ORYSI4.460e-5590.60Autophagy-related protein 8A OS=Oryza sativa subsp... [more]
ATG8C_ARATH1.298e-5488.89Autophagy-related protein 8c OS=Arabidopsis thalia... [more]
ATG8B_ORYSJ1.435e-5388.03Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8B_ORYSI1.435e-5388.03Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8A_ARATH4.174e-5387.18Autophagy-related protein 8a OS=Arabidopsis thalia... [more]
ATG8D_ARATH2.705e-5284.17Autophagy-related protein 8d OS=Arabidopsis thalia... [more]
ATG8B_ARATH3.533e-5283.33Autophagy-related protein 8b OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC07003H02SK NTLeaf1 Citrus clementina cDNA clone C07003H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299906 ID=CX299906; Name=CX299906; organism=Citrus clementina; type=EST; length=491bp
ACCCCGGGCTGCAGGCGTAGCGTCAGTTTCGCCATGGCCAAAAGTTCATT
CAAGCTCGAGCATCCATTGGAGAGGAGGCTGGCAGAATCTGCTCGCATTA
GAGAGAAGTATCCTGACAGGATTCCGGTGATTGTGGAGAAGGCTGAGAAG
ACTGATGTTCCTGACATTCACAAGAAAAAATACCTTGTCCCAGCGGATTT
ATCTGTGGGACAATTTGTTTATGTTGTCCGTAAAAGGATTAAGCTCAGTG
CAGAAAAGGCCATATTTGTTTTTGTTAAGAATACTTTACCTCCAACCGGT
GCCTTGATGTCTGCTATATATGAGGAAAACAAGGATGAAGATGGTTTTCT
TTACATGACTTACAGTGGAGAGAATACCTTCGGTTGGTCATTTTAAGAGC
GAAGGCAACAAGCCATGTATCATAAAATTTGAAAGTTGTATATTCTCAGT
TGATCCCTTTTAAGCCATTCCCAGACATGTTCACTGATATC
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