CX299939
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1) HSP 1 Score: 376.326 bits (965), Expect = 9.312e-104 Identity = 176/223 (78.92%), Postives = 201/223 (90.13%), Query Frame = 2 Query: 17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLEKYAGVLYGLGVENGQILI 685 G+FKS+ +YHY+TLK+NV++LK+IQLGLTFS+E GNLPTCGTDKYC+WQFNFREFD++ DIFA DSIELLKQSGI+ KN GID+ RF EL+MSSGIVL++++HWVTFHSGYDFGYLLKLLTCQNLPD+Q +FF LI +YFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLT+ TFR LK NFF L KY+GVLYGLGVENGQ+ I Sbjct: 52 GTFKSNADYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLKENFFVGPLHKYSGVLYGLGVENGQVAI 274
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2) HSP 1 Score: 375.941 bits (964), Expect = 1.216e-103 Identity = 175/223 (78.48%), Postives = 203/223 (91.03%), Query Frame = 2 Query: 17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTD-KYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLEKYAGVLYGLGVENGQIL 682 G+FK++ EYHY+TLK+NV++LK+IQLGLTFSDE GNLPTCGTD KYC+WQFNFREFD+ DI+A DSIELL+QSGI+F KNNE GID+ RF EL+MSSGIVL++++HWVTFHSGYDFGYLLKLLTCQNLP+TQ FF +I +YFP VYDIKHLMKFCNSLHGGLNKLAELL+VERVGICHQAGSDSLLT+ TFR L+ NFF S+EKY+GVLYGLGVENGQI+ Sbjct: 52 GTFKTNTEYHYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLTSCTFRKLQENFFIGSMEKYSGVLYGLGVENGQIV 274
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1) HSP 1 Score: 337.421 bits (864), Expect = 4.793e-92 Identity = 157/218 (72.02%), Postives = 187/218 (85.78%), Query Frame = 2 Query: 20 SFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLEKYAGVLYGLGVENG 673 +FK + + +Y+TLK NVD+LKLIQ+GLTFSDENGNLPTCGTDK+C+WQFNFREF++ EDI+A++SIELL+Q GI+F KN E GID +RFGELMMSSGIVL+D++ WVTFH GYDFGYL+KLLTC+ LP Q +FF L+ +YFPTVYDIKHLM FCN L GGLN+LAEL+ VERVGICHQAGSDSLLT +FR LK +F S EKY GVLYGLGVE+G Sbjct: 53 TFKYNNDLNYRTLKENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRKLKERYFPGSTEKYTGVLYGLGVEDG 270
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1) HSP 1 Score: 289.656 bits (740), Expect = 1.146e-77 Identity = 138/208 (66.35%), Postives = 169/208 (81.25%), Query Frame = 2 Query: 35 YEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLEKYAGVLYGL 658 YEY+Y TLK+NV+MLKLIQLGLT SDE GNLPTCGT+K C+WQFNFREF+V D+FA DSIELL++S I+ KNNE G+DA RF EL+M SG+VL+D +HWVTFH GYDFGYLLKLL+ + LP+ +FF+ + +FP VYDIK+LM FC +L+GGL K+AELL V+RVGI HQAGSDSLLT TF +K FF+ SL KY+G L+GL Sbjct: 68 YEYNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEEISDFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISHQAGSDSLLTLRTFIKMKEFFFTGSLLKYSGFLFGL 275
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CNOT7_DANRE (CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7 PE=2 SV=1) HSP 1 Score: 240.736 bits (613), Expect = 6.106e-63 Identity = 120/226 (53.10%), Postives = 163/226 (72.12%), Query Frame = 2 Query: 17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLE--KYAGVLYGLG-----VENG 673 G F+S+ +Y YQ L+ NVD+LK+IQLGLTF +E G P GT WQFNF+ F++ ED++A DSIELL SGI F K+ E GI+ M F EL+M+SG+VL + + W++FHSGYDFGYL+K+L+ LPD +V+FF ++R++FP +YD+K+LMK C +L GGL ++AE LE+ER+G HQAGSDSLLT F ++ FF ++ KY G LYGLG V+NG Sbjct: 52 GEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFEILRLFFPIIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1) HSP 1 Score: 239.965 bits (611), Expect = 1.042e-62 Identity = 119/226 (52.65%), Postives = 163/226 (72.12%), Query Frame = 2 Query: 17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLE--KYAGVLYGLG-----VENG 673 G F+S+ +Y YQ L+ NVD+LK+IQLGLTF +E G P GT WQFNF+ F++ ED++A DSIELL SGI F K+ E GI+ F EL+M+SG+VL + + W++FHSGYDFGYL+K+LT NLP+ +++FF ++R++FP +YD+K+LMK C +L GGL ++AE LE+ER+G HQAGSDSLLT F ++ FF ++ KY G LYGLG V+NG Sbjct: 52 GEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CNOT7_HUMAN (CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7 PE=1 SV=3) HSP 1 Score: 239.965 bits (611), Expect = 1.042e-62 Identity = 119/226 (52.65%), Postives = 163/226 (72.12%), Query Frame = 2 Query: 17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLE--KYAGVLYGLG-----VENG 673 G F+S+ +Y YQ L+ NVD+LK+IQLGLTF +E G P GT WQFNF+ F++ ED++A DSIELL SGI F K+ E GI+ F EL+M+SG+VL + + W++FHSGYDFGYL+K+LT NLP+ +++FF ++R++FP +YD+K+LMK C +L GGL ++AE LE+ER+G HQAGSDSLLT F ++ FF ++ KY G LYGLG V+NG Sbjct: 52 GEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CNOT7_CHICK (CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7 PE=2 SV=1) HSP 1 Score: 239.965 bits (611), Expect = 1.042e-62 Identity = 119/226 (52.65%), Postives = 163/226 (72.12%), Query Frame = 2 Query: 17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLE--KYAGVLYGLG-----VENG 673 G F+S+ +Y YQ L+ NVD+LK+IQLGLTF +E G P GT WQFNF+ F++ ED++A DSIELL SGI F K+ E GI+ F EL+M+SG+VL + + W++FHSGYDFGYL+K+LT NLP+ +++FF ++R++FP +YD+K+LMK C +L GGL ++AE LE+ER+G HQAGSDSLLT F ++ FF ++ KY G LYGLG V+NG Sbjct: 52 GEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CNOT7_BOVIN (CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1) HSP 1 Score: 239.965 bits (611), Expect = 1.042e-62 Identity = 119/226 (52.65%), Postives = 163/226 (72.12%), Query Frame = 2 Query: 17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLE--KYAGVLYGLG-----VENG 673 G F+S+ +Y YQ L+ NVD+LK+IQLGLTF +E G P GT WQFNF+ F++ ED++A DSIELL SGI F K+ E GI+ F EL+M+SG+VL + + W++FHSGYDFGYL+K+LT NLP+ +++FF ++R++FP +YD+K+LMK C +L GGL ++AE LE+ER+G HQAGSDSLLT F ++ FF ++ KY G LYGLG V+NG Sbjct: 52 GEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
BLAST of CX299939 vs. ExPASy Swiss-Prot
Match: CNOT7_XENLA (CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7 PE=2 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 2.320e-62 Identity = 119/226 (52.65%), Postives = 161/226 (71.24%), Query Frame = 2 Query: 17 GSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRXLKXNFFSSSLE--KYAGVLYGLG-----VENG 673 G F+S+ +Y YQ L+ NVD+LK+IQLGLTF +E G P GT WQFNF+ F++ ED++A DSIELL SGI F K+ E GI+ F EL M+SG+VL + + W++FHSGYDFGYL+K+LT NLP+ + +FF ++R++FP +YD+K+LMK C +L GGL ++AE LE+ER+G HQAGSDSLLT F ++ FF ++ KY G LYGLG V+NG Sbjct: 52 GEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVEQDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272 The following BLAST results are available for this feature:
BLAST of CX299939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299939 ID=CX299939; Name=CX299939; organism=Citrus clementina; type=EST; length=740bpback to top |