CX300170

Overview
NameCX300170
Unique NameCX300170
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length368
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300170 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.007e-41
Identity = 82/95 (86.32%), Postives = 85/95 (89.47%), Query Frame = 2
Query:    2 SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAEKLAAKIKSETQGTKVKDFVATTQSANFQSEIAKLRHDAEEYAKQFPTIGFEKETMKYKN 286
            SAMVPGGIRMGTPALTSRGFVEEDFAKVAY FD A KLA KIK E QGTK+KDFVA  QS+ FQSEI+KLRHD EEYAKQFPTIGFEKETMKYKN
Sbjct:  423 SAMVPGGIRMGTPALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGEAQGTKLKDFVAAMQSSAFQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          
BLAST of CX300170 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.699e-39
Identity = 79/95 (83.16%), Postives = 84/95 (88.42%), Query Frame = 2
Query:    2 SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAEKLAAKIKSETQGTKVKDFVATTQSANFQSEIAKLRHDAEEYAKQFPTIGFEKETMKYKN 286
            SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD A KLA KIK E +GTK+KDFV   +S+  QSEI+KLRHD EEYAKQFPTIGFEKETMKYKN
Sbjct:  423 SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGEAKGTKLKDFVTAMESSAIQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          
BLAST of CX300170 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.431e-39
Identity = 80/96 (83.33%), Postives = 87/96 (90.62%), Query Frame = 2
Query:    2 SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAEKLAAKIKSETQGTKVKDFVATTQ-SANFQSEIAKLRHDAEEYAKQFPTIGFEKETMKYKN 286
            SAMVPGGIRMGTPALTSRGF+EEDF KVA FFDAA K+A K+K+ETQGTK+KDFVAT + SA  +SEIAKLRHD EEYAKQFPTIGFEKETMKYKN
Sbjct:  423 SAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVATLESSAPIKSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 518          
BLAST of CX300170 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.296e-36
Identity = 75/96 (78.12%), Postives = 85/96 (88.54%), Query Frame = 2
Query:    2 SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAEKLAAKIKSETQGTKVKDFVATTQSAN-FQSEIAKLRHDAEEYAKQFPTIGFEKETMKYKN 286
            SAMVPGGIRMGTPALTSRGFVEEDFAKVA +FD A  +A K+KSE QGTK+KDFV+  +S++  QSEIAKLRH+ EE+AKQFPTIGFEKETMKYKN
Sbjct:  422 SAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYKN 517          
BLAST of CX300170 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.787e-34
Identity = 70/94 (74.47%), Postives = 83/94 (88.30%), Query Frame = 2
Query:    2 SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAEKLAAKIKSETQGTKVKDFVATTQSANF-QSEIAKLRHDAEEYAKQFPTIGFEKETMKY 280
            SAMVPGGIRMGTPALTSRGFVEEDF KVA +FDAA  LA K+K+E++GTK+KDFV   Q++++ QSEI+KL+HD EE+AKQFPTIGFEK TMKY
Sbjct:  423 SAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIGFEKATMKY 516          
BLAST of CX300170 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.226e-13
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 2
Query:    2 SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAEKLAAKIKSETQGTKVKDFVA-TTQSANFQSEIAKLRHDAEEYAKQFPTIGFE 262
            SA+ PGG+R+G PALTSRGF+E+DF KV  F D    +  ++KS+T  TK++DF +   +      ++A LR   E++A+ FP  GF+
Sbjct:  417 SAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVKSKT--TKLQDFKSFLLKDPETSHQLADLRQRVEQFARAFPMPGFD 502          
BLAST of CX300170 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 2
Query:    2 SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAEKLAAKIKSETQGTKVKDFVA-TTQSANFQSEIAKLRHDAEEYAKQFPTIG 256
            SA+ PGGIR+GTPALTSRGF E+DF KV  F     ++A K  +E  G  +KDF A T  +  F+ E+A+L    EE++ +F   G
Sbjct:  423 SALRPGGIRLGTPALTSRGFKEQDFEKVGDFIHEGVQIAKKYNAEA-GKTLKDFKAFTATNEQFKQEVAELAKRVEEFSGKFEIPG 507          
BLAST of CX300170 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.727e-12
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 2
Query:    2 SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAEKLAAKIKSETQGTKVKDFVATTQSAN-FQSEIAKLRHDAEEYAKQFPTIGFE 262
            SA+ PGGIR+GTPALTSRGF E+DF KV  F     ++A K  +E  G  +KDF + T++   F+ ++A L    EE++ +F   G E
Sbjct:  419 SALRPGGIRLGTPALTSRGFQEQDFEKVGDFIHEGVQIAKKYNAEA-GKTLKDFKSFTETNEPFKKDVADLAKRVEEFSTKFEIPGNE 505          
BLAST of CX300170 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.147e-11
Identity = 35/89 (39.33%), Postives = 55/89 (61.80%), Query Frame = 2
Query:    2 SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAEKLAAKIKSETQGTKVKDFVA-TTQSANFQSEIAKLRHDAEEYAKQFPTIGFEK 265
            SA+ PGG+R+G PALTSR F E+DF +V  F D    +  ++KS+T   K++DF +   + +     +A LR   E++A+ FP  GF++
Sbjct:  417 SAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKT--AKLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGFDE 503          
BLAST of CX300170 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.957e-11
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 2
Query:    2 SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAEKLAAKIKSET-QGTKVKDFVATTQSANFQSEIAKLRHDAEEYAKQFPTIG 256
            SA+ P G+R+GTPALTSRG +E+DF KVA+F     +L  +I+S+T     +K+F        +Q+ +  LR + E +A  FP  G
Sbjct:  394 SALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQAAVQALREEVESFASLFPLPG 479          
The following BLAST results are available for this feature:
BLAST of CX300170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
GLYN_FLAPR9.007e-4186.32Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYM_FLAPR1.699e-3983.16Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYM_SOLTU8.431e-3983.33Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ARATH2.296e-3678.13Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_PEA4.787e-3474.47Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_BOVIN1.226e-1343.18Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CAEBR1.770e-1246.51Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_CAEEL6.727e-1244.32Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYM_HUMAN1.147e-1139.33Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_HUMAN1.957e-1140.70Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionC07007A10SK SaltLeaf1 Citrus clementina cDNA clone C07007A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300170 ID=CX300170; Name=CX300170; organism=Citrus clementina; type=EST; length=368bp
GTCAGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCTCTTACTT
CTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGCATATTTCTTTGAT
GCTGCTGAGAAGTTGGCTGCGAAGATCAAGTCTGAAACTCAAGGAACAAA
GGTGAAAGATTTCGTGGCCACAACACAGTCCGCTAACTTCCAATCCGAGA
TTGCGAAACTTCGACATGATGCTGAGGAGTATGCAAAGCAGTTCCCCACA
ATTGGGTTTGAAAAGGAAACCATGAAGTACAAGAACTGACAGAAAAACGC
CACTGTACTAGAGCAGCAGAAGCCAGCCTGTATGAGCTTTTATTACACAC
AGGCGACGAGGGATGAAA
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