CX300170
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300170 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 9.007e-41 Identity = 82/95 (86.32%), Postives = 85/95 (89.47%), Query Frame = 2 Query: 2 SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAEKLAAKIKSETQGTKVKDFVATTQSANFQSEIAKLRHDAEEYAKQFPTIGFEKETMKYKN 286 SAMVPGGIRMGTPALTSRGFVEEDFAKVAY FD A KLA KIK E QGTK+KDFVA QS+ FQSEI+KLRHD EEYAKQFPTIGFEKETMKYKN Sbjct: 423 SAMVPGGIRMGTPALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGEAQGTKLKDFVAAMQSSAFQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517
BLAST of CX300170 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 1.699e-39 Identity = 79/95 (83.16%), Postives = 84/95 (88.42%), Query Frame = 2 Query: 2 SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAEKLAAKIKSETQGTKVKDFVATTQSANFQSEIAKLRHDAEEYAKQFPTIGFEKETMKYKN 286 SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD A KLA KIK E +GTK+KDFV +S+ QSEI+KLRHD EEYAKQFPTIGFEKETMKYKN Sbjct: 423 SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGEAKGTKLKDFVTAMESSAIQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517
BLAST of CX300170 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 8.431e-39 Identity = 80/96 (83.33%), Postives = 87/96 (90.62%), Query Frame = 2 Query: 2 SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAEKLAAKIKSETQGTKVKDFVATTQ-SANFQSEIAKLRHDAEEYAKQFPTIGFEKETMKYKN 286 SAMVPGGIRMGTPALTSRGF+EEDF KVA FFDAA K+A K+K+ETQGTK+KDFVAT + SA +SEIAKLRHD EEYAKQFPTIGFEKETMKYKN Sbjct: 423 SAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVATLESSAPIKSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 518
BLAST of CX300170 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 2.296e-36 Identity = 75/96 (78.12%), Postives = 85/96 (88.54%), Query Frame = 2 Query: 2 SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAEKLAAKIKSETQGTKVKDFVATTQSAN-FQSEIAKLRHDAEEYAKQFPTIGFEKETMKYKN 286 SAMVPGGIRMGTPALTSRGFVEEDFAKVA +FD A +A K+KSE QGTK+KDFV+ +S++ QSEIAKLRH+ EE+AKQFPTIGFEKETMKYKN Sbjct: 422 SAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYKN 517
BLAST of CX300170 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 4.787e-34 Identity = 70/94 (74.47%), Postives = 83/94 (88.30%), Query Frame = 2 Query: 2 SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAEKLAAKIKSETQGTKVKDFVATTQSANF-QSEIAKLRHDAEEYAKQFPTIGFEKETMKY 280 SAMVPGGIRMGTPALTSRGFVEEDF KVA +FDAA LA K+K+E++GTK+KDFV Q++++ QSEI+KL+HD EE+AKQFPTIGFEK TMKY Sbjct: 423 SAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIGFEKATMKY 516
BLAST of CX300170 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.226e-13 Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 2 Query: 2 SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAEKLAAKIKSETQGTKVKDFVA-TTQSANFQSEIAKLRHDAEEYAKQFPTIGFE 262 SA+ PGG+R+G PALTSRGF+E+DF KV F D + ++KS+T TK++DF + + ++A LR E++A+ FP GF+ Sbjct: 417 SAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVKSKT--TKLQDFKSFLLKDPETSHQLADLRQRVEQFARAFPMPGFD 502
BLAST of CX300170 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3) HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12 Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 2 Query: 2 SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAEKLAAKIKSETQGTKVKDFVA-TTQSANFQSEIAKLRHDAEEYAKQFPTIG 256 SA+ PGGIR+GTPALTSRGF E+DF KV F ++A K +E G +KDF A T + F+ E+A+L EE++ +F G Sbjct: 423 SALRPGGIRLGTPALTSRGFKEQDFEKVGDFIHEGVQIAKKYNAEA-GKTLKDFKAFTATNEQFKQEVAELAKRVEEFSGKFEIPG 507
BLAST of CX300170 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 6.727e-12 Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 2 Query: 2 SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAEKLAAKIKSETQGTKVKDFVATTQSAN-FQSEIAKLRHDAEEYAKQFPTIGFE 262 SA+ PGGIR+GTPALTSRGF E+DF KV F ++A K +E G +KDF + T++ F+ ++A L EE++ +F G E Sbjct: 419 SALRPGGIRLGTPALTSRGFQEQDFEKVGDFIHEGVQIAKKYNAEA-GKTLKDFKSFTETNEPFKKDVADLAKRVEEFSTKFEIPGNE 505
BLAST of CX300170 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 1.147e-11 Identity = 35/89 (39.33%), Postives = 55/89 (61.80%), Query Frame = 2 Query: 2 SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAEKLAAKIKSETQGTKVKDFVA-TTQSANFQSEIAKLRHDAEEYAKQFPTIGFEK 265 SA+ PGG+R+G PALTSR F E+DF +V F D + ++KS+T K++DF + + + +A LR E++A+ FP GF++ Sbjct: 417 SAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKT--AKLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGFDE 503
BLAST of CX300170 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.957e-11 Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 2 Query: 2 SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAEKLAAKIKSET-QGTKVKDFVATTQSANFQSEIAKLRHDAEEYAKQFPTIG 256 SA+ P G+R+GTPALTSRG +E+DF KVA+F +L +I+S+T +K+F +Q+ + LR + E +A FP G Sbjct: 394 SALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQAAVQALREEVESFASLFPLPG 479 The following BLAST results are available for this feature:
BLAST of CX300170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300170 ID=CX300170; Name=CX300170; organism=Citrus clementina; type=EST; length=368bpback to top |