CX300380

Overview
NameCX300380
Unique NameCX300380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RK18_ARATH (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.411e-56
Identity = 108/128 (84.38%), Postives = 118/128 (92.19%), Query Frame = 2
Query:   65 IVEASTRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            +VEA T+  T  EDR ARHSRIRKK++GT ERPRLCVFRSNKHLYVQVIDDTKMHTLASAST QKPIS+E DY+SGPTIEV+KKVGE+IAKSCLEKGITKVAFDRGGYPYHGRI+ALA AARE+GLQF
Sbjct:   45 VVEAKTK--TSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRIEALAAAAREHGLQF 170          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RK18_ORYSJ (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL18 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 6.572e-46
Identity = 89/128 (69.53%), Postives = 105/128 (82.03%), Query Frame = 2
Query:   65 IVEASTRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            +V A  +  T + DR ARH R+RKK+ GT ERPRL VFRSNKHLY QVIDDTK  TL SASTM K +S +L+YS+GPT+EV++K+GE+IAKSCLEKGITKV FDRGG+ YHGRI+ALADAARE GL F
Sbjct:   43 VVVAKVKVSTPQADRIARHVRLRKKVSGTTERPRLSVFRSNKHLYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGPTVEVAQKIGEVIAKSCLEKGITKVVFDRGGFLYHGRIKALADAARENGLDF 170          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_THESQ (50S ribosomal protein L18 OS=Thermotoga sp. (strain RQ2) GN=rplR PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.165e-36
Identity = 72/122 (59.02%), Postives = 91/122 (74.59%), Query Frame = 2
Query:   83 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            +  +K+E R  RH R+RKK+ GTPERPRLCVFRSNKH+Y Q+IDDT  HTL SAST+   + ++L  +    +E +K+VG +I K  LEKGI KV FDRGGY YHGR++ALAD ARE GL+F
Sbjct:    3 KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NVEAAKEVGLLIGKRALEKGIKKVVFDRGGYKYHGRVKALADGAREAGLEF 122          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_THEP1 (50S ribosomal protein L18 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplR PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.165e-36
Identity = 72/122 (59.02%), Postives = 91/122 (74.59%), Query Frame = 2
Query:   83 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            +  +K+E R  RH R+RKK+ GTPERPRLCVFRSNKH+Y Q+IDDT  HTL SAST+   + ++L  +    +E +K+VG +I K  LEKGI KV FDRGGY YHGR++ALAD ARE GL+F
Sbjct:    3 KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NVEAAKEVGLLIGKRALEKGIKKVVFDRGGYKYHGRVKALADGAREAGLEF 122          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_THEMA (50S ribosomal protein L18 OS=Thermotoga maritima GN=rplR PE=3 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 6.165e-36
Identity = 72/122 (59.02%), Postives = 91/122 (74.59%), Query Frame = 2
Query:   83 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            +  +K+E R  RH R+RKK+ GTPERPRLCVFRSNKH+Y Q+IDDT  HTL SAST+   + ++L  +    +E +K+VG +I K  LEKGI KV FDRGGY YHGR++ALAD ARE GL+F
Sbjct:    3 KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NVEAAKEVGLLIGKRALEKGIKKVVFDRGGYKYHGRVKALADGAREAGLEF 122          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_GEOKA (50S ribosomal protein L18 OS=Geobacillus kaustophilus GN=rplR PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.996e-35
Identity = 75/114 (65.79%), Postives = 86/114 (75.44%), Query Frame = 2
Query:  107 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            R  RH+RIRKKI GT ERPRL VFRSNKH+Y Q+IDDTK  T+ SAST+ K    E    S   IE +KKVGE++AK  LEKGI KV FDRGGY YHGR++ALADAARE GL+F
Sbjct:   11 RKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDTKSSTIVSASTLDK----EFGLDSTNNIEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_THENN (50S ribosomal protein L18 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplR PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.219e-35
Identity = 71/122 (58.20%), Postives = 90/122 (73.77%), Query Frame = 2
Query:   83 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            +  ++ E R  RH R+RKK+ GTPERPRLCVFRSNKH+Y Q+IDDT  HTL SAST+   + ++L  +    IE +K+VG +I K  +EKGI KV FDRGGY YHGR++ALAD ARE GL+F
Sbjct:    3 KKESRNERRIRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NIEAAKEVGLLIGKRAIEKGIKKVVFDRGGYKYHGRVKALADGAREAGLEF 122          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_GEOSW (50S ribosomal protein L18 OS=Geobacillus sp. (strain WCH70) GN=rplR PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.163e-34
Identity = 74/114 (64.91%), Postives = 86/114 (75.44%), Query Frame = 2
Query:  107 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            R  RH+R+RKKI GT ERPRL VFRSNKH+Y Q+IDD K  T+ SAST+ K    E D  S   IE +KKVGE++AK  LEKGI KV FDRGGY YHGR++ALADAARE GL+F
Sbjct:   11 RKKRHARVRKKIFGTAERPRLNVFRSNKHIYAQIIDDMKAVTIVSASTLDK----EFDLESTGNIEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACST (50S ribosomal protein L18 OS=Bacillus stearothermophilus GN=rplR PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.519e-34
Identity = 74/114 (64.91%), Postives = 86/114 (75.44%), Query Frame = 2
Query:  107 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            R  RH+RIRKKI GT ERPRL VFRSNKH+Y Q+IDDTK  T+ SAST+ K    E    S   IE +KKVGE++AK  LEKGI +V FDRGGY YHGR++ALADAARE GL+F
Sbjct:   11 RKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDK----EFGLDSTNNIEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CYAP7 (50S ribosomal protein L18 OS=Cyanothece sp. (strain PCC 7424) GN=rplR PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.590e-34
Identity = 72/120 (60.00%), Postives = 87/120 (72.50%), Query Frame = 2
Query:   89 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            RT+ E    RHSRIR+K++GTP RPRL VFRSN H+Y QVIDD   HTL +AST+ K +  E  +SSG T E S+ VG+++A+  L KGI KV FDRGG  YHGRI+ALA AARE GL F
Sbjct:    3 RTRTESVQRRHSRIRRKVEGTPSRPRLAVFRSNNHIYAQVIDDVAQHTLVAASTLDKDLKGE--FSSGATCEASEAVGKLVAQRALAKGIEKVVFDRGGNLYHGRIRALAQAAREAGLDF 120          
The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK18_ARATH1.411e-5684.3850S ribosomal protein L18, chloroplastic OS=Arabid... [more]
RK18_ORYSJ6.572e-4669.5350S ribosomal protein L18, chloroplastic OS=Oryza ... [more]
RL18_THESQ6.165e-3659.0250S ribosomal protein L18 OS=Thermotoga sp. (strai... [more]
RL18_THEP16.165e-3659.0250S ribosomal protein L18 OS=Thermotoga petrophila... [more]
RL18_THEMA6.165e-3659.0250S ribosomal protein L18 OS=Thermotoga maritima G... [more]
RL18_GEOKA3.996e-3565.7950S ribosomal protein L18 OS=Geobacillus kaustophi... [more]
RL18_THENN5.219e-3558.2050S ribosomal protein L18 OS=Thermotoga neapolitan... [more]
RL18_GEOSW1.163e-3464.9150S ribosomal protein L18 OS=Geobacillus sp. (stra... [more]
RL18_BACST1.519e-3464.9150S ribosomal protein L18 OS=Bacillus stearothermo... [more]
RL18_CYAP72.590e-3460.0050S ribosomal protein L18 OS=Cyanothece sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionC07009E09SK SaltLeaf1 Citrus clementina cDNA clone C07009E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bp
ACTTTCGAGTGTTTCAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCAC
CGCCATCTCTTTTCATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGA
GAGGACCGCACTGCCCGCCATTCTCGCATCAGAAAGAAGATTGATGGGAC
TCCTGAGAGGCCGAGGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATG
TCCAGGTGATTGATGATACTAAGATGCACACACTTGCTTCAGCTTCGACG
ATGCAGAAGCCCATCTCTGACGAGCTTGACTATAGTTCTGGTCCGACGAT
TGAAGTTTCAAAGAAGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGA
AGGGGATCACAAAAGTAGCCTTTGATCGAGGTGGGTACCCATACCATGGA
CGGATACAAGCCCTAGCCGATGCAGCTCGGGAATATGGTCTTCAATTCTA
AGAACTATGTAGTCAATTGTTCATTTTTTTCCAAAAATCCATTTC
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