CX300380
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RK18_ARATH (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=1 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 1.411e-56 Identity = 108/128 (84.38%), Postives = 118/128 (92.19%), Query Frame = 2 Query: 65 IVEASTRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 +VEA T+ T EDR ARHSRIRKK++GT ERPRLCVFRSNKHLYVQVIDDTKMHTLASAST QKPIS+E DY+SGPTIEV+KKVGE+IAKSCLEKGITKVAFDRGGYPYHGRI+ALA AARE+GLQF Sbjct: 45 VVEAKTK--TSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRIEALAAAAREHGLQF 170
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RK18_ORYSJ (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL18 PE=2 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 6.572e-46 Identity = 89/128 (69.53%), Postives = 105/128 (82.03%), Query Frame = 2 Query: 65 IVEASTRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 +V A + T + DR ARH R+RKK+ GT ERPRL VFRSNKHLY QVIDDTK TL SASTM K +S +L+YS+GPT+EV++K+GE+IAKSCLEKGITKV FDRGG+ YHGRI+ALADAARE GL F Sbjct: 43 VVVAKVKVSTPQADRIARHVRLRKKVSGTTERPRLSVFRSNKHLYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGPTVEVAQKIGEVIAKSCLEKGITKVVFDRGGFLYHGRIKALADAARENGLDF 170
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_THESQ (50S ribosomal protein L18 OS=Thermotoga sp. (strain RQ2) GN=rplR PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 6.165e-36 Identity = 72/122 (59.02%), Postives = 91/122 (74.59%), Query Frame = 2 Query: 83 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 + +K+E R RH R+RKK+ GTPERPRLCVFRSNKH+Y Q+IDDT HTL SAST+ + ++L + +E +K+VG +I K LEKGI KV FDRGGY YHGR++ALAD ARE GL+F Sbjct: 3 KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NVEAAKEVGLLIGKRALEKGIKKVVFDRGGYKYHGRVKALADGAREAGLEF 122
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_THEP1 (50S ribosomal protein L18 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplR PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 6.165e-36 Identity = 72/122 (59.02%), Postives = 91/122 (74.59%), Query Frame = 2 Query: 83 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 + +K+E R RH R+RKK+ GTPERPRLCVFRSNKH+Y Q+IDDT HTL SAST+ + ++L + +E +K+VG +I K LEKGI KV FDRGGY YHGR++ALAD ARE GL+F Sbjct: 3 KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NVEAAKEVGLLIGKRALEKGIKKVVFDRGGYKYHGRVKALADGAREAGLEF 122
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_THEMA (50S ribosomal protein L18 OS=Thermotoga maritima GN=rplR PE=3 SV=2) HSP 1 Score: 149.828 bits (377), Expect = 6.165e-36 Identity = 72/122 (59.02%), Postives = 91/122 (74.59%), Query Frame = 2 Query: 83 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 + +K+E R RH R+RKK+ GTPERPRLCVFRSNKH+Y Q+IDDT HTL SAST+ + ++L + +E +K+VG +I K LEKGI KV FDRGGY YHGR++ALAD ARE GL+F Sbjct: 3 KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NVEAAKEVGLLIGKRALEKGIKKVVFDRGGYKYHGRVKALADGAREAGLEF 122
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_GEOKA (50S ribosomal protein L18 OS=Geobacillus kaustophilus GN=rplR PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 3.996e-35 Identity = 75/114 (65.79%), Postives = 86/114 (75.44%), Query Frame = 2 Query: 107 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 R RH+RIRKKI GT ERPRL VFRSNKH+Y Q+IDDTK T+ SAST+ K E S IE +KKVGE++AK LEKGI KV FDRGGY YHGR++ALADAARE GL+F Sbjct: 11 RKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDTKSSTIVSASTLDK----EFGLDSTNNIEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_THENN (50S ribosomal protein L18 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplR PE=3 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 5.219e-35 Identity = 71/122 (58.20%), Postives = 90/122 (73.77%), Query Frame = 2 Query: 83 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 + ++ E R RH R+RKK+ GTPERPRLCVFRSNKH+Y Q+IDDT HTL SAST+ + ++L + IE +K+VG +I K +EKGI KV FDRGGY YHGR++ALAD ARE GL+F Sbjct: 3 KKESRNERRIRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NIEAAKEVGLLIGKRAIEKGIKKVVFDRGGYKYHGRVKALADGAREAGLEF 122
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_GEOSW (50S ribosomal protein L18 OS=Geobacillus sp. (strain WCH70) GN=rplR PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 1.163e-34 Identity = 74/114 (64.91%), Postives = 86/114 (75.44%), Query Frame = 2 Query: 107 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 R RH+R+RKKI GT ERPRL VFRSNKH+Y Q+IDD K T+ SAST+ K E D S IE +KKVGE++AK LEKGI KV FDRGGY YHGR++ALADAARE GL+F Sbjct: 11 RKKRHARVRKKIFGTAERPRLNVFRSNKHIYAQIIDDMKAVTIVSASTLDK----EFDLESTGNIEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BACST (50S ribosomal protein L18 OS=Bacillus stearothermophilus GN=rplR PE=1 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 1.519e-34 Identity = 74/114 (64.91%), Postives = 86/114 (75.44%), Query Frame = 2 Query: 107 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 R RH+RIRKKI GT ERPRL VFRSNKH+Y Q+IDDTK T+ SAST+ K E S IE +KKVGE++AK LEKGI +V FDRGGY YHGR++ALADAARE GL+F Sbjct: 11 RKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDK----EFGLDSTNNIEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CYAP7 (50S ribosomal protein L18 OS=Cyanothece sp. (strain PCC 7424) GN=rplR PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 2.590e-34 Identity = 72/120 (60.00%), Postives = 87/120 (72.50%), Query Frame = 2 Query: 89 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 RT+ E RHSRIR+K++GTP RPRL VFRSN H+Y QVIDD HTL +AST+ K + E +SSG T E S+ VG+++A+ L KGI KV FDRGG YHGRI+ALA AARE GL F Sbjct: 3 RTRTESVQRRHSRIRRKVEGTPSRPRLAVFRSNNHIYAQVIDDVAQHTLVAASTLDKDLKGE--FSSGATCEASEAVGKLVAQRALAKGIEKVVFDRGGNLYHGRIRALAQAAREAGLDF 120 The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bpback to top |