CX306107

Overview
NameCX306107
Unique NameCX306107
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306107 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.839e-31
Identity = 63/71 (88.73%), Postives = 70/71 (98.59%), Query Frame = -3
Query:  196 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 408
            ELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+PINEIEPL+LFN++FFFVAA+NPGTGKFVTDE+EE
Sbjct:  204 ELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIVFFFVAAINPGTGKFVTDEEEE 274          

HSP 2 Score: 80.1073 bits (196), Expect = 3.857e-15
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = -3
Query:  208 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALN--PGTGKFVTD 408
            ELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI E EPL+LF ++F  + A+      GKF+ D
Sbjct:   98 ELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDD 166          
BLAST of CX306107 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.459e-30
Identity = 62/71 (87.32%), Postives = 69/71 (97.18%), Query Frame = -3
Query:  196 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 408
            ELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+PINEIEPLVL NV+FFF+AA+NPGTGKF+TD++EE
Sbjct:  203 ELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAINPGTGKFITDDEEE 273          

HSP 2 Score: 75.8702 bits (185), Expect = 7.274e-14
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = -3
Query:  208 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 408
            ELFVGR+A +G A SL+GE ITGKG L+QLN+ETGIPI E EPL+LF ++F  + A+      G+FV +
Sbjct:   99 ELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDE 167          
BLAST of CX306107 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.235e-29
Identity = 60/71 (84.51%), Postives = 68/71 (95.77%), Query Frame = -3
Query:  196 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 408
            ELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGKF+TDE+E+
Sbjct:  206 ELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276          

HSP 2 Score: 78.9518 bits (193), Expect = 8.593e-15
Identity = 40/69 (57.97%), Postives = 51/69 (73.91%), Query Frame = -3
Query:  208 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 408
            ELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI E EPL+LF ++F  + A+      G+F+ D
Sbjct:  100 ELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDD 168          
BLAST of CX306107 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.235e-29
Identity = 60/71 (84.51%), Postives = 68/71 (95.77%), Query Frame = -3
Query:  196 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 408
            ELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGKF+TDE+E+
Sbjct:  206 ELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276          

HSP 2 Score: 80.4925 bits (197), Expect = 2.953e-15
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = -3
Query:  208 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 408
            ELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI E EPL+LF ++F  + A+      GKFV D
Sbjct:  100 ELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDD 168          
BLAST of CX306107 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.042e-28
Identity = 61/71 (85.92%), Postives = 65/71 (91.55%), Query Frame = -3
Query:  196 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 408
            ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPI +IEPLVL NV FFF AA+NPG GKF+TD+ EE
Sbjct:  194 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264          

HSP 2 Score: 80.1073 bits (196), Expect = 3.857e-15
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = -3
Query:  208 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 408
            ELFVGR+A +G A SL+GE +TGKG LAQLN+ETGIPI E EPL+LF ++F  + A+      GKFV D
Sbjct:   90 ELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD 158          
The following BLAST results are available for this feature:
BLAST of CX306107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBS_TOBAC3.839e-3188.73Photosystem II 22 kDa protein, chloroplastic OS=Ni... [more]
PSBS_SPIOL1.459e-3087.32Photosystem II 22 kDa protein, chloroplastic OS=Sp... [more]
PSBS_SOLSG1.235e-2984.51Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_SOLLC1.235e-2984.51Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_ARATH3.042e-2885.92Photosystem II 22 kDa protein, chloroplastic OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionC18014A11Rv Drought1 Citrus clementina cDNA clone C18014A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306107 ID=CX306107; Name=CX306107; organism=Citrus clementina; type=EST; length=410bp
TTTTTTTTTTTTTTTTTTTTTTTTTTAGCAAGAATGCGTTAGTTCTTCTG
CTTGAATTAGTAATAATAACACGGATTCATTTGACAGAAAGAGAGAGAGA
GAGAGAGATGACGACCAAATATTATCTTTTACATTGAATGGAAATTCAAG
TTTATCATAATAAAGTAAACAGGAACAGCTTCCACGTTTCATCTACTCCT
CATCTTCATCTGTGACAAATTTACCAGTTCCAGGATTCAATGCGGCAACA
AAGAAGAAGATAACGTTGAACAGCACAAGTGGTTCGATTTCGTTGATGGG
GATCCCAGTCTCAATGTTGAGTTGTGCTAGAGCTCCTTTCCCTGTTATGA
TTTCTCCAATCAAAGAGAATGCAATACCCAACTGAGCCAATCTTCCCACA
AACAGCTCGT
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