CX306107
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX306107 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 3.839e-31 Identity = 63/71 (88.73%), Postives = 70/71 (98.59%), Query Frame = -3 Query: 196 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 408 ELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+PINEIEPL+LFN++FFFVAA+NPGTGKFVTDE+EE Sbjct: 204 ELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIVFFFVAAINPGTGKFVTDEEEE 274 HSP 2 Score: 80.1073 bits (196), Expect = 3.857e-15 Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = -3 Query: 208 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALN--PGTGKFVTD 408 ELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI E EPL+LF ++F + A+ GKF+ D Sbjct: 98 ELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDD 166
BLAST of CX306107 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 1.459e-30 Identity = 62/71 (87.32%), Postives = 69/71 (97.18%), Query Frame = -3 Query: 196 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 408 ELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+PINEIEPLVL NV+FFF+AA+NPGTGKF+TD++EE Sbjct: 203 ELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAINPGTGKFITDDEEE 273 HSP 2 Score: 75.8702 bits (185), Expect = 7.274e-14 Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = -3 Query: 208 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 408 ELFVGR+A +G A SL+GE ITGKG L+QLN+ETGIPI E EPL+LF ++F + A+ G+FV + Sbjct: 99 ELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDE 167
BLAST of CX306107 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 1.235e-29 Identity = 60/71 (84.51%), Postives = 68/71 (95.77%), Query Frame = -3 Query: 196 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 408 ELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGKF+TDE+E+ Sbjct: 206 ELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276 HSP 2 Score: 78.9518 bits (193), Expect = 8.593e-15 Identity = 40/69 (57.97%), Postives = 51/69 (73.91%), Query Frame = -3 Query: 208 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 408 ELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI E EPL+LF ++F + A+ G+F+ D Sbjct: 100 ELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDD 168
BLAST of CX306107 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 1.235e-29 Identity = 60/71 (84.51%), Postives = 68/71 (95.77%), Query Frame = -3 Query: 196 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 408 ELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGKF+TDE+E+ Sbjct: 206 ELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276 HSP 2 Score: 80.4925 bits (197), Expect = 2.953e-15 Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = -3 Query: 208 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 408 ELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI E EPL+LF ++F + A+ GKFV D Sbjct: 100 ELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDD 168
BLAST of CX306107 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 3.042e-28 Identity = 61/71 (85.92%), Postives = 65/71 (91.55%), Query Frame = -3 Query: 196 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 408 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPI +IEPLVL NV FFF AA+NPG GKF+TD+ EE Sbjct: 194 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264 HSP 2 Score: 80.1073 bits (196), Expect = 3.857e-15 Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = -3 Query: 208 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 408 ELFVGR+A +G A SL+GE +TGKG LAQLN+ETGIPI E EPL+LF ++F + A+ GKFV D Sbjct: 90 ELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD 158 The following BLAST results are available for this feature:
BLAST of CX306107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX306107 ID=CX306107; Name=CX306107; organism=Citrus clementina; type=EST; length=410bpback to top |