CX308729
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX308729 vs. ExPASy Swiss-Prot
Match: RUXG_ARATH (Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana GN=At2g23930 PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 1.480e-27 Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1 Query: 1 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVSKS 198 MDKKLQIKLNANRM+ GTLRGFDQFMNLV+DNTVEVNGN+K DIGMVVIRGNS+VTVEALEPV +S Sbjct: 14 MDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSIVTVEALEPVGRS 79
BLAST of CX308729 vs. ExPASy Swiss-Prot
Match: RUXG_MEDSA (Probable small nuclear ribonucleoprotein G OS=Medicago sativa GN=C29 PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 7.347e-27 Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 1 Query: 1 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPV 189 MDK+LQI L ANRMIVGTLRGFDQFMNLV+DNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPV Sbjct: 14 MDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPV 76
BLAST of CX308729 vs. ExPASy Swiss-Prot
Match: RUXG_DROME (Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster GN=SmG PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 2.217e-15 Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 1 Query: 1 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTV-EVNGNEKNDIGMVVIRGNSVVTVEALEPV 189 MDK++ +KLN R + G LRGFD FMN+V+D+TV E N KN+IGMVVIRGNS+V VEAL+ V Sbjct: 13 MDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIVMVEALDRV 76
BLAST of CX308729 vs. ExPASy Swiss-Prot
Match: RUXG_MOUSE (Small nuclear ribonucleoprotein G OS=Mus musculus GN=Snrpg PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 8.425e-15 Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1 Query: 1 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV-NGNEKNDIGMVVIRGNSVVTVEALEPV 189 MDKKL +KLN R + G LRGFD FMNLVID VE+ ++N+IGMVVIRGNS++ +EALE V Sbjct: 13 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76
BLAST of CX308729 vs. ExPASy Swiss-Prot
Match: RUXG_HUMAN (Small nuclear ribonucleoprotein G OS=Homo sapiens GN=SNRPG PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 8.425e-15 Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1 Query: 1 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV-NGNEKNDIGMVVIRGNSVVTVEALEPV 189 MDKKL +KLN R + G LRGFD FMNLVID VE+ ++N+IGMVVIRGNS++ +EALE V Sbjct: 13 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76
BLAST of CX308729 vs. ExPASy Swiss-Prot
Match: RUXG_BOVIN (Small nuclear ribonucleoprotein G OS=Bos taurus GN=SNRPG PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 8.425e-15 Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1 Query: 1 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV-NGNEKNDIGMVVIRGNSVVTVEALEPV 189 MDKKL +KLN R + G LRGFD FMNLVID VE+ ++N+IGMVVIRGNS++ +EALE V Sbjct: 13 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76
BLAST of CX308729 vs. ExPASy Swiss-Prot
Match: RUXG_DICDI (Probable small nuclear ribonucleoprotein G OS=Dictyostelium discoideum GN=snrpG PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.589e-13 Identity = 37/65 (56.92%), Postives = 50/65 (76.92%), Query Frame = 1 Query: 1 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VNGNEKNDIGMVVIRGNSVVTVEALEPVS 192 +DKKL IKLN NR + G LRGFD FMN+ + +TVE V+ EK +IGMV+IRGNS++ +E LE ++ Sbjct: 15 LDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKYEIGMVIIRGNSILLMEPLESMA 79
BLAST of CX308729 vs. ExPASy Swiss-Prot
Match: RUXGL_HUMAN (Small nuclear ribonucleoprotein G-like protein OS=Homo sapiens PE=3 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 1.030e-12 Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 1 Query: 4 DKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV--NGNEKNDIGMVVIRGNSVVTVEALEPV 189 DKK +KLN R + G LRGFD FMNLVID VE+ +G +KN IGMV IRGNS++ +EALE V Sbjct: 14 DKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKN-IGMVEIRGNSIIMLEALERV 76
BLAST of CX308729 vs. ExPASy Swiss-Prot
Match: RUXG_CAEEL (Probable small nuclear ribonucleoprotein G OS=Caenorhabditis elegans GN=snr-7 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 8.719e-12 Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 1 Query: 1 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV--NGNEKNDIGMVVIRGNSVVTVEALEPVS 192 MDK++ +KLN NR + G LRGFD FMN+VID VE +G N +GM VIRGNSVV +E E +S Sbjct: 13 MDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVN-LGMTVIRGNSVVIMEPKERIS 77 The following BLAST results are available for this feature:
BLAST of CX308729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX308729 ID=CX308729; Name=CX308729; organism=Citrus clementina; type=EST; length=252bpback to top |