CX308947
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX308947 vs. ExPASy Swiss-Prot
Match: RPAC2_DANRE (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio GN=polr1d PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 5.439e-17 Identity = 43/107 (40.19%), Postives = 63/107 (58.88%), Query Frame = -1 Query: 1 ELEQNYC*SMEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEK 318 EL Q + M D+ TF L EEDHTL N++R+ + + V FCGYSI HPS++++N R+QT G PA E L++ L +C+HV TF + +F+ E+ Sbjct: 3 ELGQKHALEMVRTDGADEGCVTFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEPLRNGLNNLTDVCKHVLQTFEARMKEFKEQEE 109
BLAST of CX308947 vs. ExPASy Swiss-Prot
Match: RPAC2_XENLA (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis GN=polr1d PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 7.103e-17 Identity = 41/107 (38.32%), Postives = 66/107 (61.68%), Query Frame = -1 Query: 1 ELEQNYC*SMEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQT-TGDPAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSEK 318 E E+ M ++S TF L EEDHTL N++R+ + ++P V FCGYSI HPS+ ++N R+QT G PA E + EL+ +C+HV +TF ++ +++ ++ Sbjct: 4 ETERKTTLEMVQAQGNEESCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQTRNGIPAVEPFRRGLNELVDVCQHVLNTFETSIKEYKEQKE 110
BLAST of CX308947 vs. ExPASy Swiss-Prot
Match: RPAC2_HUMAN (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens GN=POLR1D PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.067e-16 Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = -1 Query: 13 ELEQNYC*SMEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 318 E E+ M A D+ TF L EEDHTL N++R+ + ++P V FCGY+ HPS++++N+R+QT G PA E + ELM +C+HV F ++ D++ Sbjct: 20 EGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKDYK 122
BLAST of CX308947 vs. ExPASy Swiss-Prot
Match: RPAC2_MOUSE (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Mus musculus GN=Polr1d PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 6.013e-16 Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = -1 Query: 4 ELEQNYC*SMEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFRTSE 318 E E+ M A D+ TF L EEDHTL N +R+ + ++P V FCGY+ HPS++++N+R+QT G PA E + EL+ +C+HV F ++ D++ + Sbjct: 20 EGERKTALEMVQAAGTDRQCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQKGLNELLNVCQHVLVKFEASIKDYKAKK 125
BLAST of CX308947 vs. ExPASy Swiss-Prot
Match: RPAC2_YEAST (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Saccharomyces cerevisiae GN=RPC19 PE=1 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.750e-15 Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = -1 Query: 25 DQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQELMLMCRHVRSTFAKAV 270 D ++A+F + EEDHTL NA+R+ + ++P V FCGYSIPHPS+ +NIR+QT G+ A + L+ ++LM +C V S F + + Sbjct: 57 DGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKGLKDLMDLCDVVESKFTEKI 139
BLAST of CX308947 vs. ExPASy Swiss-Prot
Match: RPAC2_BOVIN (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus GN=POLR1D PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 2.285e-15 Identity = 39/103 (37.86%), Postives = 63/103 (61.17%), Query Frame = -1 Query: 13 ELEQNYC*SMEHGAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQELMLMCRHVRSTFAKAVDDFR 318 E E+ M A D+ TF L EEDHTL N++R+ + ++P V FCGY+ HPS++++N+R+QT G PA E + +LM +C+HV F ++ +++ Sbjct: 20 EGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQRGLTDLMNVCQHVLDKFEASIKEYK 122
BLAST of CX308947 vs. ExPASy Swiss-Prot
Match: RPC19_DICDI (DNA-directed RNA polymerases I and III subunit rpc19 OS=Dictyostelium discoideum GN=rpc19 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 8.683e-15 Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = -1 Query: 22 ATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGD-PAREVLKDSCQELMLMCRHVRSTFAKAVD 258 ATF T+EDHTL NA+ + L ++P+V F GYSIPHPSD R+N+R+QT + A+E L ++ + RH+ TF A+D Sbjct: 36 ATFIFTDEDHTLGNALHYVLMKNPKVDFSGYSIPHPSDNRMNLRIQTKSNITAQESLLQGLTDIKDISRHIFETFNNALD 115
BLAST of CX308947 vs. ExPASy Swiss-Prot
Match: RPAC2_SCHPO (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Schizosaccharomyces pombe GN=rpc19 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 3.300e-14 Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = -1 Query: 31 GAFGDQSNATFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTT-GDPAREVLKDSCQELMLMCRHVRSTFAK 282 G D ++ TF + +EDHTL N++R+ + ++P V FCGYSIPHPS+A++N R+QT A +VL+ +L+ +C V F + Sbjct: 27 GHSADLTSVTFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVLRKGLDDLIDLCDAVTEKFTE 111
BLAST of CX308947 vs. ExPASy Swiss-Prot
Match: RPAC2_DROME (Probable DNA-directed RNA polymerases I and III subunit RPAC2 OS=Drosophila melanogaster GN=l(2)37Cg PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.139e-13 Identity = 35/90 (38.89%), Postives = 55/90 (61.11%), Query Frame = -1 Query: 16 GDQSNA----TFSLTEEDHTLANAVRFTLNQDPRVTFCGYSIPHPSDARVNIRVQTTGDPAREVLKDSCQELMLMCRHVRSTFAKAVDDF 273 GD+ N TF T E HTL NA++ + + P V FCGY+IPHP++ +++ R+Q+ D A ++LK ++L +C H TF K + +F Sbjct: 9 GDEKNGEGSRTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRDRAIDILKRGLEDLEGLCDHTIVTFEKEMAEF 98 The following BLAST results are available for this feature:
BLAST of CX308947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX308947 ID=CX308947; Name=CX308947; organism=Citrus clementina; type=EST; length=348bpback to top |