DY257754

Overview
NameDY257754
Unique NameDY257754
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length515
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9935 contig Ccv1_Contig9935:4..518. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257754 vs. ExPASy Swiss-Prot
Match: PFD6_BOVIN (Prefoldin subunit 6 OS=Bos taurus GN=PFDN6 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.869e-23
Identity = 54/121 (44.63%), Postives = 83/121 (68.60%), Query Frame = 2
Query:   38 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSLQAGKAKA 400
            +Q++L+ +     +LQKD+ K+   R+K   QL EN +V +EL LL+    V+KL+GPVLVKQ+L EA A V KR++YI+AE+KR ++ L+DLE++   ++E + ++QQ  Q  QA KA A
Sbjct:    5 IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLEQQSEQQRETLAQLQQEFQRAQAAKAGA 125          
BLAST of DY257754 vs. ExPASy Swiss-Prot
Match: PFD6_HUMAN (Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.600e-23
Identity = 54/121 (44.63%), Postives = 82/121 (67.77%), Query Frame = 2
Query:   38 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSLQAGKAKA 400
            +Q++L+ +     +LQKD+ K+   R+K   QL EN +V +EL LL+    V+KL+GPVLVKQ+L EA A V KR++YI+AE+KR ++ L+DLE +   ++E + ++QQ  Q  QA KA A
Sbjct:    5 IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQRAQAAKAGA 125          
BLAST of DY257754 vs. ExPASy Swiss-Prot
Match: PFD6_CANFA (Prefoldin subunit 6 OS=Canis familiaris GN=PFDN6 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.600e-23
Identity = 54/121 (44.63%), Postives = 82/121 (67.77%), Query Frame = 2
Query:   38 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSLQAGKAKA 400
            +Q++L+ +     +LQKD+ K+   R+K   QL EN +V +EL LL+    V+KL+GPVLVKQ+L EA A V KR++YI+AE+KR ++ L+DLE +   ++E + ++QQ  Q  QA KA A
Sbjct:    5 IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQRAQAAKAGA 125          
BLAST of DY257754 vs. ExPASy Swiss-Prot
Match: PFD6_MOUSE (Prefoldin subunit 6 OS=Mus musculus GN=Pfdn6 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.126e-22
Identity = 53/119 (44.54%), Postives = 81/119 (68.07%), Query Frame = 2
Query:   38 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSLQAGKA 394
            +Q++L+ +     +LQKD+ K+   R+K   QL EN +V +EL LL+    V+KL+GPVLVKQ+L EA A V KR++YI+AE+KR ++ L+DLE +   ++E + ++QQ  Q  QA KA
Sbjct:    5 IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQRAQAAKA 123          
BLAST of DY257754 vs. ExPASy Swiss-Prot
Match: PFD6_DROME (Probable prefoldin subunit 6 OS=Drosophila melanogaster GN=CG7770 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.860e-17
Identity = 54/119 (45.38%), Postives = 71/119 (59.66%), Query Frame = 2
Query:   17 SAAALRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQ 373
            SAA  +++Q E+E+  N    LQK   K  + R     QL EN+ VL EL LL     VYKL GPVLVKQ+L E+  NV KRIEYIS ELK     L+++E+     +E++ K QQ+ Q
Sbjct:    5 SAALYKKMQAEIESYQN----LQKSCLKMVKQRAVLESQLNENKCVLDELNLLGPDNKVYKLFGPVLVKQELEESRQNVGKRIEYISKELKSSTDALENMEKDMLKHRESVAKYQQQCQ 119          
BLAST of DY257754 vs. ExPASy Swiss-Prot
Match: PFD6_CAEEL (Probable prefoldin subunit 6 OS=Caenorhabditis elegans GN=pfd-6 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.686e-16
Identity = 43/118 (36.44%), Postives = 73/118 (61.86%), Query Frame = 2
Query:   47 ELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSLQAGKAKA 400
            + E + N L  L+KD  K    R++  ++L E++ V  EL L+   + VYKLIG VLV+QDL EA + V KR+E+I +E KR++A++ D+ +K   +++ +  +Q+  Q +    A+A
Sbjct:    6 KFEEEVNKLRTLEKDREKYFTSRQEMEMRLTESKNVKAELDLMESDSKVYKLIGAVLVRQDLEEARSTVEKRLEFIDSETKRVEASISDISKKCTEQRDKVMNMQKSFQMMAQAAAQA 123          
BLAST of DY257754 vs. ExPASy Swiss-Prot
Match: PFD6_CAEBR (Probable prefoldin subunit 6 OS=Caenorhabditis briggsae GN=pfd-6 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.983e-16
Identity = 40/111 (36.04%), Postives = 73/111 (65.77%), Query Frame = 2
Query:   47 ELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSL 379
            + E + + L  L+KD  K    R++  ++L E++ V  EL L++  + VYKL+GPVLV+QDL EA + V KR+E+I +E+KR++A++ D+ +K   +++ +  +Q+  Q +
Sbjct:    6 KFEEEISKLKTLEKDREKYFSSRQEMEMRLTESKNVKAELDLMDSDSKVYKLMGPVLVRQDLEEARSTVEKRLEFIESEIKRVEASITDVNKKSIEQRDKVMNMQKAFQMM 116          
BLAST of DY257754 vs. ExPASy Swiss-Prot
Match: PFD6_DICDI (Probable prefoldin subunit 6 OS=Dictyostelium discoideum GN=pfdn6 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.283e-14
Identity = 45/122 (36.89%), Postives = 71/122 (58.20%), Query Frame = 2
Query:   23 AALRELQRELETKANDLSKLQK-DIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSLQA 385
            A ++++Q +L  KA D  ++ + ++ K    R K   QL ENE+V KE  LL   A +YKL GPVL KQ   EA   +  R++ I+  LK ++   +D+E+K   ++  IF+ Q +I+SL A
Sbjct:   13 AEIQQIQDQL-IKARDAFQVHETELQKLSASRSKLLTQLNENEMVKKEFDLLESEAKIYKLNGPVLFKQTKEEAENTITSRLDIINNNLKTIETNFKDIEKKAMEQRNKIFEYQNKIRSLTA 133          
BLAST of DY257754 vs. ExPASy Swiss-Prot
Match: PFD6_SCHPO (Probable prefoldin subunit 6 OS=Schizosaccharomyces pombe GN=SPAC3A11.13 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.885e-11
Identity = 38/104 (36.54%), Postives = 57/104 (54.81%), Query Frame = 2
Query:   50 LETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQ 361
            +E  A     LQ ++    +  KK   QL EN  VL EL  +   +N+YK IGP LVKQ   EA  NV+ R+++I+ E+ RL+   +  +E+ +  K AI + Q
Sbjct:    1 MEELAKKYQNLQTELSTYVESLKKLETQLQENTTVLNELEKVAPDSNIYKQIGPTLVKQSHEEAKTNVKTRLDFINKEIARLENQTKISQEEFSKVKGAIIQAQ 104          
The following BLAST results are available for this feature:
BLAST of DY257754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PFD6_BOVIN3.869e-2344.63Prefoldin subunit 6 OS=Bos taurus GN=PFDN6 PE=2 SV... [more]
PFD6_HUMAN6.600e-2344.63Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 ... [more]
PFD6_CANFA6.600e-2344.63Prefoldin subunit 6 OS=Canis familiaris GN=PFDN6 P... [more]
PFD6_MOUSE1.126e-2244.54Prefoldin subunit 6 OS=Mus musculus GN=Pfdn6 PE=2 ... [more]
PFD6_DROME1.860e-1745.38Probable prefoldin subunit 6 OS=Drosophila melanog... [more]
PFD6_CAEEL2.686e-1636.44Probable prefoldin subunit 6 OS=Caenorhabditis ele... [more]
PFD6_CAEBR5.983e-1636.04Probable prefoldin subunit 6 OS=Caenorhabditis bri... [more]
PFD6_DICDI3.283e-1436.89Probable prefoldin subunit 6 OS=Dictyostelium disc... [more]
PFD6_SCHPO9.885e-1136.54Probable prefoldin subunit 6 OS=Schizosaccharomyce... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1BB03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257754 ID=DY257754; Name=DY257754; organism=Citrus clementina; type=EST; length=515bp
GGCAGCAGCAATGGGATCGGCCGCAGCTCTTCGAGAGCTTCAACGTGAAC
TCGAAACCAAAGCTAACGATCTCAGCAAACTCCAAAAAGATATTGGTAAA
AATCATCAAGTGAGAAAGAAGTACACTATTCAGCTTGGAGAAAACGAGCT
CGTCCTTAAGGAGTTGGGTTTGTTAAATGAAGGAGCAAATGTCTATAAAT
TGATTGGTCCAGTTCTTGTGAAGCAAGATTTGGCAGAGGCTAATGCCAAT
GTGCGCAAGAGAATTGAATACATCTCTGCTGAGTTGAAGCGACTTGATGC
AACTCTTCAGGATTTGGAAGAAAAACAAAATAGCAAAAAGGAGGCGATCT
TCAAAGTACAACAGAGGATACAATCACTTCAGGCAGGAAAAGCTAAGGCC
TAATTAACTTTGTAGGAGTGTTCGCTTTGCCCACAGCTCTGTTTCTGTTT
TGCCTCAAGTGCGACTTGGTGTTCTTTACTGTTAATTTTTGAGGCTATAT
AGTTGTGCGTTATAG
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