DY257963

Overview
NameDY257963
Unique NameDY257963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length313
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1041 contig Ccv1_Contig1041:1..313. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of DY257963 vs. ExPASy Swiss-Prot
Match: RH57_ARATH (DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis thaliana GN=RH57 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.460e-15
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    1 IPFLRNIANLMKASGCEVPSWILTLPKLKGKKHRPRRESISTKPKDDE 144
            +PFLRNIAN M +SGCEVPSWI++L K K +KHRPRR+SISTKPK D+
Sbjct:  489 VPFLRNIANTMMSSGCEVPSWIMSLKKKKWRKHRPRRDSISTKPKADK 536
[Close]
BLAST of DY257963 vs. ExPASy Swiss-Prot
Match: RH57_ORYSJ (DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sativa subsp. japonica GN=Os07g0647900 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.930e-12
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    4 PFLRNIANLMKASGCEVPSWILTLPKLKGKKHRPRRESISTKPKDD 141
            PFLRNIAN++ +SGCEVPSWI  LPKLK KKHR  R+ IST P +D
Sbjct:  495 PFLRNIANVLISSGCEVPSWIKALPKLKRKKHRVNRDPISTLPDED 540
The following BLAST results are available for this feature:
BLAST of DY257963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RH57_ARATH8.460e-1572.92DEAD-box ATP-dependent RNA helicase 57 OS=Arabidop... [more]
RH57_ORYSJ3.930e-1269.57DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sa... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2BE09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257963 ID=DY257963; Name=DY257963; organism=Citrus clementina; type=EST; length=313bp
ATTCCATTTTTGCGTAACATAGCTAATTTAATGAAAGCCTCTGGTTGTGA
GGTTCCATCCTGGATCTTGACCTTGCCAAAACTGAAGGGTAAGAAGCATC
GGCCACGAAGAGAATCAATTTCAACCAAACCAAAAGATGATGAAGAGTAA
AGCTGCAAATCACCGTCATTTATCTTGAAAGAGTTTTCTGTTGTTGGCTT
TATTTGTTTCCTTTATCAAGTCCATAGAAACTAGTACTGTTCCAGTTCCA
GACACTGTTTGGGTTCTCATTGGTTCAATAAATTTTTGACATCCAGCCAA
AAAAAAAAAAAAA
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