DY258822
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY258822 vs. ExPASy Swiss-Prot
Match: RH53_ARATH (DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 2.104e-28 Identity = 57/156 (36.54%), Postives = 80/156 (51.28%), Query Frame = 3 Query: 3 KTPL-LMWRRTQEPAGEVDKEVGAAADLLFTL*AYERHST*LFRGGLLSKEMKHL-------MGHCFMHIDVSSCWALILSDAQICRP**E**DVLPVGFAENVECALER*ANDLSGMRISATRPPW*KNHDLRYV*TTLTIDLAGDSDQKLADGI 446 + PL L+ T+E A +V+KE +A L T+ L+ G + ++M+ L +G ID+ AL LS+ Q E +L VGFAE+VE LE+ M SAT P W ++ +Y+ LT+DL GDSDQKLADGI Sbjct: 177 RNPLCLVLAPTRELARQVEKEFRESAPSLDTIC--------LYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLD-EADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGI 323 HSP 2 Score: 64.3142 bits (155), Expect = 2.104e-28 Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = 1 Query: 454 YSIATSMTDEP*IIGQLITEHAKGGKCIGFTQTKRDADRLAHAMANSY 597 YSI IIG L+TEHAKGGKCI FTQTKRDADRL++A+A S+ Sbjct: 326 YSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSF 373 HSP 3 Score: 38.1206 bits (87), Expect = 2.104e-28 Identity = 17/25 (68.00%), Postives = 18/25 (72.00%), Query Frame = 2 Query: 602 CEPLHGDISHSLRDRTLFAIRDGPF 676 CE LHGDIS S R+RTL RDG F Sbjct: 375 CEALHGDISQSQRERTLAGFRDGHF 399
BLAST of DY258822 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 3.710e-27 Identity = 54/146 (36.99%), Postives = 75/146 (51.37%), Query Frame = 3 Query: 30 TQEPAGEVDKEVGAAADLLFTL*AYERHST*LFRGGLLSKEMKHL-------MGHCFMHIDVSSCWALILSDAQICRP**E**DVLPVGFAENVECALER*ANDLSGMRISATRPPW*KNHDLRYV*TTLTIDLAGDSDQKLADGI 446 T+E A +V+KE +A L T+ L+ G + ++M+ L +G ID+ AL LS+ Q E +L VGFAE+VE L++ M SAT P W ++ +Y+ LTIDL GDSDQKLADGI Sbjct: 199 TRELARQVEKEFRESAPSLDTIC--------LYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLD-EADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGI 335 HSP 2 Score: 63.1586 bits (152), Expect = 3.710e-27 Identity = 31/49 (63.27%), Postives = 34/49 (69.39%), Query Frame = 1 Query: 451 LYSIATSMTDEP*IIGQLITEHAKGGKCIGFTQTKRDADRLAHAMANSY 597 +YSIA IIG L+ EH KGGKCI FTQTKRDADRLA +A SY Sbjct: 337 MYSIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAKSY 385 HSP 3 Score: 36.965 bits (84), Expect = 3.710e-27 Identity = 16/25 (64.00%), Postives = 18/25 (72.00%), Query Frame = 2 Query: 602 CEPLHGDISHSLRDRTLFAIRDGPF 676 CE LHGDIS + R+RTL RDG F Sbjct: 387 CEALHGDISQAQRERTLAGFRDGNF 411
BLAST of DY258822 vs. ExPASy Swiss-Prot
Match: RH53_ORYSJ (DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 3.243e-24 Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1 Query: 451 LYSIATSMTDEP*IIGQLITEHAKGGKCIGFTQTKRDADRLAHAMANSYS 600 LYSIA+ +P I+G LI EHA GGKCI FTQTKR+ADRLA+AM SY+ Sbjct: 304 LYSIASEHYGKPSILGPLIKEHANGGKCIVFTQTKREADRLAYAMGRSYA 353 HSP 2 Score: 50.447 bits (119), Expect = 3.243e-24 Identity = 27/71 (38.03%), Postives = 38/71 (53.52%), Query Frame = 3 Query: 261 VLPVGFAENVECALER*ANDLSGMRISATRPPW*KNHDLRYV*TTLTIDLAGDSDQKLADGIPPLFHCNQH 473 +L VGF E+VE +E + M SAT P W + +Y+ + IDL GD DQKL +GI ++H Sbjct: 241 MLAVGFDEDVEVIMENLPQNRQSMLFSATMPSWIRKITSKYLKDPIIIDLVGDEDQKLPEGISLYSIASEH 311 HSP 3 Score: 35.8094 bits (81), Expect = 3.243e-24 Identity = 15/25 (60.00%), Postives = 18/25 (72.00%), Query Frame = 2 Query: 602 CEPLHGDISHSLRDRTLFAIRDGPF 676 C+ LHGDIS + R+RTL RDG F Sbjct: 354 CQALHGDISQNQRERTLSGFRDGRF 378
BLAST of DY258822 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2) HSP 1 Score: 55.8398 bits (133), Expect = 7.814e-21 Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 1 Query: 451 LYSIATSMTDEP*IIGQLITEHAKGGKCIGFTQTKRDADRLAHAMANS 594 LY+IAT+ T + I+ LIT +AKGGK I FTQTKRDAD ++ A++NS Sbjct: 327 LYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNS 374 HSP 2 Score: 54.6842 bits (130), Expect = 7.814e-21 Identity = 47/139 (33.81%), Postives = 68/139 (48.92%), Query Frame = 3 Query: 30 TQEPAGEVDKEVGAAADLLFTL*AYERHST*LFRGGLLSKEMKHLMGHCFMHIDVSSCWALILSDAQICRP**E**DVLPVGFAENVECALER*ANDLSGMRISATRPPW*KNHDLRYV*TTLTIDLAGDSDQKLADGI 446 T+E A +V+KE+ +A L T+ Y S + L++ + ++G ID+ +L L + + E +L VGF E VE LE M SAT P W K +Y+ L IDL GD D+KLA+GI Sbjct: 189 TRELAKQVEKEIKESAPYLSTVCVYGGVSY-TIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLD-EADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGI 325 HSP 3 Score: 31.9574 bits (71), Expect = 7.814e-21 Identity = 15/24 (62.50%), Postives = 16/24 (66.67%), Query Frame = 2 Query: 605 EPLHGDISHSLRDRTLFAIRDGPF 676 E LHGDIS R+RTL A R G F Sbjct: 378 EALHGDISQHQRERTLNAFRQGKF 401
BLAST of DY258822 vs. ExPASy Swiss-Prot
Match: RH3_ORYSJ (DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2) HSP 1 Score: 59.6918 bits (143), Expect = 6.217e-20 Identity = 50/145 (34.48%), Postives = 77/145 (53.10%), Query Frame = 3 Query: 12 LLMWRRTQEPAGEVDKEVGAAADLLFTL*AYERHST*LFRGGLLSKEMKHLMGHCFMHIDVSSCWALILSDAQICRP**E**DVLPVGFAENVECALER*ANDLSGMRISATRPPW*KNHDLRYV*TTLTIDLAGDSDQKLADGI 446 +L+ T+E A +V+KE+ +A L T+ Y S + + L S+ + ++G ID+ + +L L + + E +L VGF E+VE L++ + M SAT P W K RY+ LTIDL GD D+KLA+GI Sbjct: 183 VLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYNVQQNAL-SRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLD-EADQMLAVGFEEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGI 325 HSP 2 Score: 49.2914 bits (116), Expect = 6.217e-20 Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 1 Query: 451 LYSIATSMTDEP*IIGQLITEHAKGGKCIGFTQTKRDADRLAHAMANS 594 LY+I + T + ++ LIT +AKGGK I FT+TKRDAD ++ A+ NS Sbjct: 327 LYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNS 374 HSP 3 Score: 30.4166 bits (67), Expect = 6.217e-20 Identity = 14/24 (58.33%), Postives = 15/24 (62.50%), Query Frame = 2 Query: 605 EPLHGDISHSLRDRTLFAIRDGPF 676 E LHGDIS R+RTL R G F Sbjct: 378 EALHGDISQHQRERTLNGFRQGKF 401
BLAST of DY258822 vs. ExPASy Swiss-Prot
Match: RH9_ORYSJ (DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica GN=Os12g0611200 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 2.061e-19 Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 1 Query: 451 LYSIATSMTDEP*IIGQLITEHAKGGKCIGFTQTKRDADRLAHAMANSYSL*AFAWGYLTQPE 639 LYSIA+ +P ++G+LI EHAKGGKCI FTQTKRDADRL++ M S+ A G +TQ + Sbjct: 318 LYSIASEGHAKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQAL-HGDITQAQ 379 HSP 2 Score: 50.8322 bits (120), Expect = 2.061e-19 Identity = 27/62 (43.55%), Postives = 37/62 (59.68%), Query Frame = 3 Query: 261 VLPVGFAENVECALER*ANDLSGMRISATRPPW*KNHDLRYV*TTLTIDLAGDSDQKLADGI 446 +L VGF E+VE L+R + SAT P W + +Y+ +TIDL G+ DQKLA+GI Sbjct: 255 MLSVGFDEDVETILDRVPPKRQTLMFSATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGI 316 The following BLAST results are available for this feature:
BLAST of DY258822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DY258822 ID=DY258822; Name=DY258822; organism=Citrus clementina; type=EST; length=691bpback to top |