DY260015

Overview
NameDY260015
Unique NameDY260015
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length916
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260015_ssr107 microsatellite DY260015_ssr107:107..116. BLAST: Citrus ESTs to Prunus persica proteins V1
DY260015_ssr580 microsatellite DY260015_ssr580:580..594. BLAST: Citrus ESTs to Prunus persica proteins V1
DY260015_ssr64 microsatellite DY260015_ssr64:64..78. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1392 contig Ccv1_Contig1392:1..916. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260015 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 9.284e-57
Identity = 124/262 (47.33%), Postives = 141/262 (53.82%), Query Frame = 1
Query:  148 MASWVLSECGLKPLPHIFPRPRTG-----INPSKARFLHSKKSLTDLKLPSVKC-SGDFSRDKNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAXGTMFWALFVLGHDW*RNFFFLNLGASFPLLKFGFCFLICSGHGNLSKDHKLKSVGGHRPHSPFRFPYQGRKLAPGTLHQTHGLVKNDKSRPP 915
            MASWVLSECGL+PLP ++P+PRTG      NP+K RF     S TDL   S  C S    R+KNW L+VSAPLRV  +E E+                        FDPGAPPPFKL+DIR AIPKHCWVKDPW+SM Y                Y NNWVVWPLYW A  TMFWALFVLGHD                           GHG+ S D KL SV GH  HS    PY G +++  T HQ HG V+ND+S  P
Sbjct:    1 MASWVLSECGLRPLPRVYPKPRTGHPLLNSNPTKLRF-----SRTDLGNGSSFCLSSGILREKNWALRVSAPLRVLQVEEEEENKEGERVINGGEE----------FDPGAPPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVAVVFGLAAVAAYFNNWVVWPLYWFAQSTMFWALFVLGHD--------------------------CGHGSFSNDPKLNSVVGHILHSSILVPYHGWRISHRTHHQNHGHVENDESWHP 221          
BLAST of DY260015 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.341e-55
Identity = 118/259 (45.56%), Postives = 140/259 (54.05%), Query Frame = 1
Query:  148 MASWVLSECGLKPLPHIFPRPRTGI---NPSKARFLHSKKSLTDLKLPSVKCSGDFSRDKNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAXGTMFWALFVLGHDW*RNFFFLNLGASFPLLKFGFCFLICSGHGNLSKDHKLKSVGGHRPHSPFRFPYQGRKLAPGTLHQTHGLVKNDKSRPP 915
            MA+W   +CGLKPL  + PRPRTG    + S+  FL + K +   K   ++C+    R++NWGLKVSAPLRVA +E E                         FDPGAPPPF LADIRAAIPKHCWVKDPW+SMSY                YLNNW+VWPLYWAA GTMFWALFVLGHD                           GHG+ S + KL SV GH  HS    PY G +++  T HQ HG  +ND+S  P
Sbjct:    1 MATWYHQKCGLKPLAPVIPRPRTGAALSSTSRVEFLDTNKVVAGPKFQPLRCN---LRERNWGLKVSAPLRVASIEEEQKSVDLTNGTNGVEHEKLPE-----FDPGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRDVIAVFGLAAAAAYLNNWLVWPLYWAAQGTMFWALFVLGHD--------------------------CGHGSFSNNSKLNSVVGHLLHSSILVPYHGWRISHRTHHQHHGHAENDESWHP 225          
BLAST of DY260015 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.875e-49
Identity = 113/260 (43.46%), Postives = 130/260 (50.00%), Query Frame = 1
Query:  151 ASWVLSECGLKPLPHIFPRPRTGINPSKARFLHSKKSLTDLK----LPSVKCSG-DFSRDKNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAXGTMFWALFVLGHDW*RNFFFLNLGASFPLLKFGFCFLICSGHGNLSKDHKLKSVGGHRPHSPFRFPYQGRKLAPGTLHQTHGLVKNDKSRPP 915
            A WVLSECGL+PLP I+ RPR G   SK   L   + L D K      S K S    S+  NW L V+ P+ V+ + GED                        FD GAPPPF LADIRAAIPKHCWVK+PW+SMSY                Y NNWV WPLYW   GTMFWALFVLGHD                           GHG+ S + KL SV GH  HS    PY G +++  T HQ HG V+ND+S  P
Sbjct:    3 AGWVLSECGLRPLPRIYSRPRIGFT-SKTTNLLKLRELPDSKSYNLCSSFKVSSWSNSKQSNWALNVAVPVNVSTVSGEDDREREEFNGIVNVDEGKGEF----FDAGAPPPFTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVAAYFNNWVAWPLYWFCQGTMFWALFVLGHD--------------------------CGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHP 231          
BLAST of DY260015 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 7.125e-49
Identity = 113/264 (42.80%), Postives = 134/264 (50.76%), Query Frame = 1
Query:  148 MASWVLSECGLKPLPHIFPRPRTGINPSKARFLHSKKSLTDLKLPSVKCSGDFSRD---KNWGLKVSAPLRV-----APLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAXGTMFWALFVLGHDW*RNFFFLNLGASFPLLKFGFCFLICSGHGNLSKDHKLKSVGGHRPHSPFRFPYQGRKLAPGTLHQTHGLVKNDKSRPP 915
            MA+ VLSECG++PLP I+  PR+    +  +F  S  S +     S    G  SRD   +NW L VS PL       +PLE ++                        FDPGAPPPF LADIRAAIPKHCWVK+PWKS+SY                YLNNW+VWPLYW A GTMFWALFVLGHD                           GHG+ S D KL SV GH  HS    PY G +++  T HQ HG V+ND+S  P
Sbjct:    1 MANLVLSECGIRPLPRIYTTPRSNFLSNNNKFRPSLSSSSYKTSSSPLSFGLNSRDGFTRNWALNVSTPLTTPIFEESPLEEDNKQR---------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGAAYLNNWIVWPLYWLAQGTMFWALFVLGHD--------------------------CGHGSFSNDPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHP 217          
BLAST of DY260015 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.534e-46
Identity = 110/261 (42.15%), Postives = 129/261 (49.43%), Query Frame = 1
Query:  148 MASWVLSECGLKPLPHIFPRPRTGI--NPSKARFLHSKKSLTDLKLPSVKCS---GDFSRDKNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAXGTMFWALFVLGHDW*RNFFFLNLGASFPLLKFGFCFLICSGHGNLSKDHKLKSVGGHRPHSPFRFPYQGRKLAPGTLHQTHGLVKNDKSRPP 915
            MAS VLSECG +PLP  +P+  T    NP K  F    K    LK PS   +   G +S+ +NW L V+ PL       E+                        FDPGAPPPF LADIRAAIPKHCWVK+PW SMSY                Y NNW++WPLYW A GTMFWALFVLGHD                           GHG+ S D +L SV GH  HS    PY G +++  T HQ HG V+ND+S  P
Sbjct:    1 MASSVLSECGFRPLPRFYPKHTTSFASNP-KPTF----KFNPPLKPPSSLLNSRYGFYSKTRNWALNVATPLTTLQSPSEEDTER--------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVAAYFNNWLLWPLYWFAQGTMFWALFVLGHD--------------------------CGHGSFSNDPRLNSVAGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHP 210          
BLAST of DY260015 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.629e-40
Identity = 91/205 (44.39%), Postives = 103/205 (50.24%), Query Frame = 1
Query:  316 KNWGLKVSAPLRV-----APLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAXGTMFWALFVLGHDW*RNFFFLNLGASFPLLKFGFCFLICSGHGNLSKDHKLKSVGGHRPHSPFRFPYQGRKLAPGTLHQTHGLVKNDKSRPP 915
            +NW L V+ PL V      P+E E                         FDPGAPPPF LADIRAAIPKHCWVK+PWKSMSY                YLNNW+VWPLYW A GTMFWALFVLGHD                           GHG+ S D +L SV GH  HS    PY G +++  T HQ HG V+ND+S  P
Sbjct:   17 RNWALNVTTPLTVDSSSSPPIEEEPKTQR--------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWKSMSYVVRELAIVFALAAGAAYLNNWLVWPLYWIAQGTMFWALFVLGHD--------------------------CGHGSFSNDPRLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHP 175          
BLAST of DY260015 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.763e-31
Identity = 70/156 (44.87%), Postives = 84/156 (53.85%), Query Frame = 1
Query:  448 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAXGTMFWALFVLGHDW*RNFFFLNLGASFPLLKFGFCFLICSGHGNLSKDHKLKSVGGHRPHSPFRFPYQGRKLAPGTLHQTHGLVKNDKSRPP 915
            FDP A PPFK+ DIRAAIPKHCWVK P +SMSY                Y+++W +WPLYWAA GT+FWA+FVLGHD                           GHG+ S    L SV GH  HS    PY G +++  T HQ HG V+ND+S  P
Sbjct:   26 FDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVAALAIAAVYVDSWFLWPLYWAAQGTLFWAIFVLGHD--------------------------CGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVP 155          
BLAST of DY260015 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.130e-31
Identity = 70/156 (44.87%), Postives = 80/156 (51.28%), Query Frame = 1
Query:  448 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAXGTMFWALFVLGHDW*RNFFFLNLGASFPLLKFGFCFLICSGHGNLSKDHKLKSVGGHRPHSPFRFPYQGRKLAPGTLHQTHGLVKNDKSRPP 915
            FDPGAPPPFK+ADIRAAIPKHCW K   +S+SY                  N+W  WPLYW A GTMFWALFVLGHD                           GHG+ S   KL S  GH  HS    PY G +++  T HQ HG V+ D+S  P
Sbjct:   22 FDPGAPPPFKIADIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFNSWFFWPLYWPAQGTMFWALFVLGHD--------------------------CGHGSFSNSSKLNSFVGHILHSLILVPYNGWRISHRTHHQNHGHVEKDESWVP 151          
BLAST of DY260015 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.700e-31
Identity = 69/156 (44.23%), Postives = 82/156 (52.56%), Query Frame = 1
Query:  448 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAXGTMFWALFVLGHDW*RNFFFLNLGASFPLLKFGFCFLICSGHGNLSKDHKLKSVGGHRPHSPFRFPYQGRKLAPGTLHQTHGLVKNDKSRPP 915
            FDP A PPFK+ DIRAAIPKHCWVK P +SMSY                Y ++W +WPLYW A GT+FWA+FVLGHD                           GHG+ S    L SV GH  HS    PY G +++  T HQ HG V+ND+S  P
Sbjct:   23 FDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVTRDIFAVAALAMAAVYFDSWFLWPLYWVAQGTLFWAIFVLGHD--------------------------CGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVP 152          
BLAST of DY260015 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.407e-30
Identity = 66/156 (42.31%), Postives = 83/156 (53.21%), Query Frame = 1
Query:  448 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAXGTMFWALFVLGHDW*RNFFFLNLGASFPLLKFGFCFLICSGHGNLSKDHKLKSVGGHRPHSPFRFPYQGRKLAPGTLHQTHGLVKNDKSRPP 915
            FDP APPPF+LA+IR  IPKHCWVKDP +S+SY                +L++W+ +PLYWA  GTMFWA+FVLGHD                           GHG+ S    L +V GH  HS    PY G +++  T HQ HG V+ D+S  P
Sbjct:   22 FDPSAPPPFRLAEIRNVIPKHCWVKDPLRSLSYVVRDVIFVATLIGIAIHLDSWLFYPLYWAIQGTMFWAIFVLGHD--------------------------CGHGSFSDSQLLNNVVGHILHSAILVPYHGWRISHKTHHQNHGNVETDESWVP 151          
The following BLAST results are available for this feature:
BLAST of DY260015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
FAD3C_SESIN9.284e-5747.33Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3C_SOYBN1.341e-5545.56Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD3C_RICCO1.875e-4943.46Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]
FAD3C_ARATH7.125e-4942.80Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3D_ARATH2.534e-4642.15Temperature-sensitive omega-3 fatty acid desaturas... [more]
FAD3C_BRANA4.629e-4044.39Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3E_ARATH1.763e-3144.87Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_PHAAU5.130e-3144.87Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_BRANA6.700e-3144.23Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_TOBAC7.407e-3042.31Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YP05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260015 ID=DY260015; Name=DY260015; organism=Citrus clementina; type=EST; length=916bp
GAGAGATATTTGTGAGGTTGTTGTTCACACAACACTCTGACGTACTAAAT
TCTTATTTATTTACTTGGCTTGGCTTGGCTGCTTCACAATTCTTTGACAC
CTATCTTCTCTCTCTCTAACTCTTTGAGAGGATTTTTCTGAGACCCAATG
GCGAGTTGGGTTCTTTCAGAATGTGGTTTAAAGCCTCTGCCTCATATTTT
TCCGAGGCCAAGGACTGGAATCAATCCCTCAAAGGCCAGGTTTTTGCACT
CAAAAAAGAGTTTAACAGATCTAAAGCTCCCATCAGTTAAATGTTCGGGT
GATTTTTCTAGAGACAAGAACTGGGGTCTTAAAGTTAGTGCTCCACTGAG
GGTGGCACCACTTGAGGGGGAGGATGAAGAAGAGAGAATCAACGGTGTTA
ATGGGATTGGAAATAACAAAGGAGTCGAAGAAGAAGAGGGATCTGAATTT
GATCCTGGGGCTCCTCCTCCTTTCAAGCTAGCTGATATTAGAGCTGCTAT
TCCAAAGCATTGTTGGGTTAAGGATCCTTGGAAGTCTATGAGCTATGTTG
TTAGAGATGTTGTGGTGGTTTTTGCCTTGGCTGCTGCTGCTGCTTATTTG
AACAATTGGGTTGTTTGGCCTTTGTACTGGGCTGCTCANGGAACCATGTT
TTGGGCTCTTTTTGTGCTCGGTCATGATTGGTAACGAAATTTCTTCTTTT
TAAATCTGGGGGCTTCGTTTCCTTTGCTCAAGTTTGGATTTTGTTTCCTA
ATTTGCAGTGGTCATGGAAACCTTTCAAAGGATCACAAGTTGAAAAGTGT
GGGGGGGCACCGGCCGCATTCTCCATTCCGGTTCCCTTACCAGGGAAGGA
AATTAGCCCCCGGAACTCTCCACCAAACCCATGGGCTTGTGAAAAATGAC
AAATCCCGGCCCCCCT
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