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Overview
| Analysis Name | Citrus australis genome v1.0 (UQ) |
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| Method | PacBio CSS, HiFi (Assembly with Hifiasm) |
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| Source | University of Queensland |
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| Date performed | 2023-04-27 |
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CGD Accession: CGD23002
Citation: Upuli Nakandala, Ardashir Kharabian Masouleh, Malcolm W Smith, Agnelo Furtado, Patrick Mason, Lena Constantin, Robert J Henry, Haplotype resolved chromosome level genome assembly of Citrus australis reveals disease resistance and other citrus specific genes, Horticulture Research, 2023; uhad058, https://doi.org/10.1093/hr/uhad058
Primary Assembly Metrics
| Assembly size |
311 Mb |
| Number of scaffolds |
9 |
| N50 |
36,275,562 bp |
| Predicted transcripts |
32,009 |
| Annotated genes |
29,464 |
| Assembly BUSCO score (embryophtya_odb10) |
98.9% |
| Annotation BUSCO score (embryophyta_odb10) |
95.4% |
Assembly
The Citrus australis Genome v1.0 assembly file is available in FASTA format.
Downloads
Gene Predictions
The Citrus australis v1.0 genome gene prediction files are available in FASTA and GFF3 formats.
Downloads
Functional Analysis
Functional annotation for the Citrus australis Genome v1.0 are available for download below. The Citrus australis Genome v1.0 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS).
Downloads
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