Citrus australis genome v1.0 (UQ)
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Overview
CGD Accession: CGD23002 Citation: Upuli Nakandala, Ardashir Kharabian Masouleh, Malcolm W Smith, Agnelo Furtado, Patrick Mason, Lena Constantin, Robert J Henry, Haplotype resolved chromosome level genome assembly of Citrus australis reveals disease resistance and other citrus specific genes, Horticulture Research, 2023; uhad058, https://doi.org/10.1093/hr/uhad058
Primary Assembly Metrics
Assembly
The Citrus australis Genome v1.0 assembly file is available in FASTA format. Downloads
Gene Predictions
The Citrus australis v1.0 genome gene prediction files are available in FASTA and GFF3 formats. Downloads
Functional Analysis
Functional annotation for the Citrus australis Genome v1.0 are available for download below. The Citrus australis Genome v1.0 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS). Downloads
Homology
Homology of the Citrus australis Genome v1.0 proteins was determined by pairwise sequence comparison using the blastp algorithm against various protein databases. An expectation value cutoff less than 1e-9 was used for the NCBI nr (Release 2021-09) and 1e-6 for the Arabidoposis proteins (Araport11), UniProtKB/SwissProt (Release 2021-09), and UniProtKB/TrEMBL (Release 2021-09) databases. The best hit reports are available for download in Excel format.
Protein Homologs
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