Atalantia buxifolia cv. HKC v2.0 genome

Overview
Analysis NameAtalantia buxifolia cv. HKC v2.0 genome
MethodPacBio, Oxford Nanopore, Illumina (Assembly with SMARTdenovo, miniasm, NextDenovo)
SourceHuazhong Agriculture University
Date performed2023-12-21

 

About the assembly

For this genome, please cite Huang et al, Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits.  This data was originally downloaded from the Citrus Pan-genome to Breeding Database.  This data is also on NCBI under BioProject PRJNA327148 and the assembly accession number is GCA_030444775.1.  The listed BioSample isolate designation is HKC.

Assembly metrics

Assembly size 304 Mb
Number of scaffolds 431
N50 32,240,160 bp
Predicted transcripts 41,806
Annotated genes 26,021
Assembly BUSCO score (embryophyta_odb10) 98.9%
Annotation BUSCO score (embryophyta_odb10) 96.4%