Atalantia buxifolia cv. HKC v2.0 genome
|
Overview
About the assembly For this genome, please cite Huang et al, Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits. This data was originally downloaded from the Citrus Pan-genome to Breeding Database. This data is also on NCBI under BioProject PRJNA327148 and the assembly accession number is GCA_030444775.1. The listed BioSample isolate designation is HKC. Assembly metrics
Assembly
The Atalantia buxifolia cv. HKC genome v2.0 assembly files are available in GFF3 and FASTA format. Downloads
Gene Predictions
The Atalantia buxifolia cv. HKC_v2.0 genome gene prediction files are available in GFF3 and FASTA format. Downloads
Functional Analysis
Functional annotation for the Atalantia buxifolia HKC genome v2.0 are available for download below. The Atalantia buxifolia genome v2.0 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS). Downloads
Homology
Homology of the Atalantia buxifolia HKC genome v2.0 proteins was determined by pairwise sequence comparison using the blastp algorithm against various protein databases. An expectation value cutoff less than 1e-6 for the Arabidoposis proteins (Araport11, 2022-09), UniProtKB/SwissProt (Release 2023-07), and UniProtKB/TrEMBL (Release 2023-07) databases. The best hit reports are available for download in Excel format. Protein Homologs
|