Citrus maxima cv. XGF genome v1.0 | Citrus Genome Database

Overview


Analysis Name	Citrus maxima cv. XGF genome v1.0
Method	Oxford Nanopore, PacBio, Illumina (Assembly with SMARTdenovo, miniasm, NextDenovo)
Source	Huazhong Agriculture University
Date performed	2023-12-21

About the assembly

For this genome, please cite Huang et al, Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits. This data was originally downloaded from the Citrus Pan-genome to Breeding Database. This data is also on NCBI under BioProject PRJNA318855 and the assembly accession number is GCA_030448945.1. The listed BioSample isolate designation is XGF.

Assembly metrics

Assembly size	355 Mb
Number of scaffolds	537
N50	1,565,249 bp
Predicted transcripts	47,488
Annotated genes	27,827
Assembly BUSCO score (embryophyta_odb10)	98.4%
Annotation BUSCO score (embryophyta_odb10)	92.3%

Assembly

The Citrus maxima cv. XGF genome v1.0 assembly files are available in GFF3 and FASTA format.

Downloads

Chromosomes (FASTA file)

Gene Predictions

The Citrus maxima cv. XGF v1.0 genome gene prediction files are available in GFF3 and FASTA format.

Downloads

Protein sequences (FASTA file)	Cm_XGF_v1.0.proteins.fasta.gz
CDS (FASTA file)	Cm_XGF_v1.0.cds.fasta.gz
Genes (GFF3 file)	Cm_XGF_v1.0.genes.gff3.gz

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