Citrus maxima cv. XGF genome v1.0

Overview
Analysis NameCitrus maxima cv. XGF genome v1.0
MethodOxford Nanopore, PacBio, Illumina (Assembly with SMARTdenovo, miniasm, NextDenovo)
SourceHuazhong Agriculture University
Date performed2023-12-21

 

About the assembly

For this genome, please cite Huang et al, Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits.  This data was originally downloaded from the Citrus Pan-genome to Breeding Database.  This data is also on NCBI under BioProject PRJNA318855 and the assembly accession number is GCA_030448945.1.  The listed BioSample isolate designation is XGF.

Assembly metrics

Assembly size 355 Mb
Number of scaffolds 537
N50 1,565,249 bp
Predicted transcripts 47,488
Annotated genes 27,827
Assembly BUSCO score (embryophyta_odb10) 98.4%
Annotation BUSCO score (embryophyta_odb10) 92.3%

 

Assembly

The Citrus maxima cv. XGF genome v1.0 assembly files are available in GFF3 and FASTA format.

Downloads

Chromosomes (FASTA file) Cm_XGF_v1.0.fasta.gz
Gene Predictions

The Citrus maxima cv. XGF v1.0 genome gene prediction files are available in GFF3 and FASTA format.

Downloads

Protein sequences  (FASTA file) Cm_XGF_v1.0.proteins.fasta.gz
CDS  (FASTA file) Cm_XGF_v1.0.cds.fasta.gz
Genes (GFF3 file) Cm_XGF_v1.0.genes.gff3.gz