FC931337

Overview
NameFC931337
Unique NameFC931337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: VP241_ARATH (Vacuolar protein sorting-associated protein 24 homolog 1 OS=Arabidopsis thaliana GN=VPS24-1 PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.666e-79
Identity = 150/180 (83.33%), Postives = 166/180 (92.22%), Query Frame = 3
Query:  192 VMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQLP 731
            VMN+IKPKP+P+QLLRDWQRKLRQECRNIERQIRDIQ+EE+NVQKAIK+AAKRNDM SAK+LA+E+V SR+TVNRLYENKAQMNSISMHLGESVAIARTVGHL+KSAEVMKLVNNLMKAP++AATMQEFSKEMTKAGVIEEFVN+A+D ALDS          VDKVLT IAGETAA+LP
Sbjct:    4 VMNIIKPKPDPKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPQMAATMQEFSKEMTKAGVIEEFVNEAIDNALDSEDMEEEIDEEVDKVLTAIAGETAAELP 183          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: VP242_ARATH (Putative vacuolar protein sorting-associated protein 24 homolog 2 OS=Arabidopsis thaliana GN=VPS24-2 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.247e-52
Identity = 107/152 (70.39%), Postives = 126/152 (82.89%), Query Frame = 3
Query:  276 IERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQLP 731
            I+  + DI+REE+NV KAIKD+ KRND+ +AK+LA+E+V SR+TV RLYENKAQ+NSISMHLGES+A A TVG+L+KS EVMKLVN+LMKAPE+A TMQ FSKEMTK GVIEEFV+DAVD ALDS          VDKVLT IAGETAA+LP
Sbjct:    3 IKSLLSDIEREERNVHKAIKDSVKRNDLVTAKALAREIVSSRRTVKRLYENKAQVNSISMHLGESIATAVTVGNLSKSGEVMKLVNSLMKAPEIAVTMQAFSKEMTKTGVIEEFVSDAVDNALDSEDIEEEIEEEVDKVLTAIAGETAAELP 154          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHMP3_RAT (Charged multivesicular body protein 3 OS=Rattus norvegicus GN=Vps24 PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 8.121e-36
Identity = 73/170 (42.94%), Postives = 110/170 (64.71%), Query Frame = 3
Query:  222 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQLP 731
            P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D  ++  D           +D++L  I      + P
Sbjct:   12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAP 181          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHMP3_PONAB (Charged multivesicular body protein 3 OS=Pongo abelii GN=VPS24 PE=2 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 8.121e-36
Identity = 73/170 (42.94%), Postives = 110/170 (64.71%), Query Frame = 3
Query:  222 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQLP 731
            P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D  ++  D           +D++L  I      + P
Sbjct:   12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAP 181          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHMP3_MOUSE (Charged multivesicular body protein 3 OS=Mus musculus GN=Vps24 PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 8.121e-36
Identity = 73/170 (42.94%), Postives = 110/170 (64.71%), Query Frame = 3
Query:  222 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQLP 731
            P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D  ++  D           +D++L  I      + P
Sbjct:   12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAP 181          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHMP3_MACFA (Charged multivesicular body protein 3 OS=Macaca fascicularis GN=VPS24 PE=2 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 8.121e-36
Identity = 73/170 (42.94%), Postives = 110/170 (64.71%), Query Frame = 3
Query:  222 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQLP 731
            P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D  ++  D           +D++L  I      + P
Sbjct:   12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIRATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAP 181          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHMP3_BOVIN (Charged multivesicular body protein 3 OS=Bos taurus GN=VPS24 PE=2 SV=4)

HSP 1 Score: 150.599 bits (379), Expect = 8.121e-36
Identity = 73/170 (42.94%), Postives = 110/170 (64.71%), Query Frame = 3
Query:  222 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQLP 731
            P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D  ++  D           +D++L  I      + P
Sbjct:   12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAP 181          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHMP3_HUMAN (Charged multivesicular body protein 3 OS=Homo sapiens GN=VPS24 PE=1 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 1.061e-35
Identity = 73/170 (42.94%), Postives = 110/170 (64.71%), Query Frame = 3
Query:  222 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQLP 731
            P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D  ++  D           +D++L  I      + P
Sbjct:   12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAP 181          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHMP3_XENLA (Charged multivesicular body protein 3 OS=Xenopus laevis GN=vps24 PE=2 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 5.264e-35
Identity = 72/170 (42.35%), Postives = 110/170 (64.71%), Query Frame = 3
Query:  222 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQLP 731
            P+ L+ +W  K+R+E R I+RQIRDIQRE++ V+++IK++AK+ +  +   LA+E+V+S+K VN+LY +KA MNS+ M +   +A+ R  G L KS EVMK + NL+K PE+ ATM+E SKEM KAG+IEE + D  +   D           +D++L  +      + P
Sbjct:   12 PKDLVNEWSLKIRKEMRVIDRQIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVQSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKLPEIQATMRELSKEMMKAGIIEEMLEDTFEGMEDQDEMEEQAEMEIDRILFEVTAGALGKAP 181          
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHMP3_DANRE (Charged multivesicular body protein 3 OS=Danio rerio GN=vps24 PE=2 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 5.264e-35
Identity = 72/170 (42.35%), Postives = 110/170 (64.71%), Query Frame = 3
Query:  222 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQLP 731
            P+ L+ +W  K+R+E R I+RQIRDIQREE+ V+++IKDAAK+        LA+E+++S++ +N+LY +KAQMNS+ + +   +++ R  G L KS EVMK + +L+K PE+ ATM++ SKEM KAG+IEE + D ++   D           VDK+L  I      + P
Sbjct:   12 PKDLINEWSLKIRKEMRVIDRQIRDIQREEEKVKRSIKDAAKKGQKDVCIILAKEMIQSKRAINKLYASKAQMNSVLLSMKNQLSVLRVAGALQKSTEVMKAMQSLVKIPEIQATMRDLSKEMMKAGIIEEMLEDTLEGMDDEEEMEEAAEAEVDKILFEITAGALGKAP 181          
The following BLAST results are available for this feature:
BLAST of FC931337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
VP241_ARATH2.666e-7983.33Vacuolar protein sorting-associated protein 24 hom... [more]
VP242_ARATH1.247e-5270.39Putative vacuolar protein sorting-associated prote... [more]
CHMP3_RAT8.121e-3642.94Charged multivesicular body protein 3 OS=Rattus no... [more]
CHMP3_PONAB8.121e-3642.94Charged multivesicular body protein 3 OS=Pongo abe... [more]
CHMP3_MOUSE8.121e-3642.94Charged multivesicular body protein 3 OS=Mus muscu... [more]
CHMP3_MACFA8.121e-3642.94Charged multivesicular body protein 3 OS=Macaca fa... [more]
CHMP3_BOVIN8.121e-3642.94Charged multivesicular body protein 3 OS=Bos tauru... [more]
CHMP3_HUMAN1.061e-3542.94Charged multivesicular body protein 3 OS=Homo sapi... [more]
CHMP3_XENLA5.264e-3542.35Charged multivesicular body protein 3 OS=Xenopus l... [more]
CHMP3_DANRE5.264e-3542.35Charged multivesicular body protein 3 OS=Danio rer... [more]

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Properties
Property NameValue
Genbank descriptionC34104A08EF PostHarvP1 Citrus clementina cDNA clone C34104A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931337 ID=FC931337; Name=FC931337; organism=Citrus clementina; type=EST; length=733bp
GGACCAGGCGTCCAGCGATCGACTGTTGCTGGACCTCAGAAAAATAAAAA
TTCAGAAAAAAAAAGATACGAATTTGGATTGCGTTTGATGTTCAATTGAT
CGGTTGCTGGAAAAAGAGAAGACTTCGAAGATCAGACGAGAAAAATTAGA
AAAAAATAATAGAGATAAAAAAAGCTAAGGAAATGGAAAAAGTTATGAAC
ATGATAAAGCCAAAGCCTAATCCGCAACAGCTGTTGAGGGATTGGCAACG
TAAGCTTCGCCAAGAGTGCCGGAACATTGAGCGCCAAATTCGAGATATAC
AGAGAGAAGAGAAAAATGTGCAGAAAGCAATTAAAGATGCTGCCAAGAGA
AACGACATGAGCTCTGCCAAGTCTCTGGCTCAGGAACTCGTCAGATCTAG
AAAGACAGTTAACCGTCTCTATGAAAATAAGGCACAAATGAACTCAATAT
CGATGCACCTAGGAGAAAGTGTAGCGATTGCTCGTACTGTGGGGCATTTG
AACAAGAGTGCTGAGGTTATGAAACTTGTCAACAATCTCATGAAGGCACC
AGAAGTAGCTGCTACAATGCAAGAGTTCAGCAAAGAAATGACCAAGGCTG
GAGTAATTGAGGAGTTTGTGAATGATGCTGTTGATACAGCACTGGACTCG
GAGGATATTGAAGAGGAGATAGAAGAAGAAGTTGATAAGGTCTTGACTGG
CATTGCTGGTGAGACTGCAGCACAGCTGCCTGA
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