FC931337
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: VP241_ARATH (Vacuolar protein sorting-associated protein 24 homolog 1 OS=Arabidopsis thaliana GN=VPS24-1 PE=2 SV=1) HSP 1 Score: 295.049 bits (754), Expect = 2.666e-79 Identity = 150/180 (83.33%), Postives = 166/180 (92.22%), Query Frame = 3 Query: 192 VMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQLP 731 VMN+IKPKP+P+QLLRDWQRKLRQECRNIERQIRDIQ+EE+NVQKAIK+AAKRNDM SAK+LA+E+V SR+TVNRLYENKAQMNSISMHLGESVAIARTVGHL+KSAEVMKLVNNLMKAP++AATMQEFSKEMTKAGVIEEFVN+A+D ALDS VDKVLT IAGETAA+LP Sbjct: 4 VMNIIKPKPDPKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPQMAATMQEFSKEMTKAGVIEEFVNEAIDNALDSEDMEEEIDEEVDKVLTAIAGETAAELP 183
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: VP242_ARATH (Putative vacuolar protein sorting-associated protein 24 homolog 2 OS=Arabidopsis thaliana GN=VPS24-2 PE=2 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 1.247e-52 Identity = 107/152 (70.39%), Postives = 126/152 (82.89%), Query Frame = 3 Query: 276 IERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQLP 731 I+ + DI+REE+NV KAIKD+ KRND+ +AK+LA+E+V SR+TV RLYENKAQ+NSISMHLGES+A A TVG+L+KS EVMKLVN+LMKAPE+A TMQ FSKEMTK GVIEEFV+DAVD ALDS VDKVLT IAGETAA+LP Sbjct: 3 IKSLLSDIEREERNVHKAIKDSVKRNDLVTAKALAREIVSSRRTVKRLYENKAQVNSISMHLGESIATAVTVGNLSKSGEVMKLVNSLMKAPEIAVTMQAFSKEMTKTGVIEEFVSDAVDNALDSEDIEEEIEEEVDKVLTAIAGETAAELP 154
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHMP3_RAT (Charged multivesicular body protein 3 OS=Rattus norvegicus GN=Vps24 PE=1 SV=3) HSP 1 Score: 150.599 bits (379), Expect = 8.121e-36 Identity = 73/170 (42.94%), Postives = 110/170 (64.71%), Query Frame = 3 Query: 222 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQLP 731 P++L+ +W K+R+E R ++RQIRDIQREE+ V++++KDAAK+ LA+E++RSRK V++LY +KA MNS+ M + +A+ R G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D ++ D +D++L I + P Sbjct: 12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAP 181
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHMP3_PONAB (Charged multivesicular body protein 3 OS=Pongo abelii GN=VPS24 PE=2 SV=3) HSP 1 Score: 150.599 bits (379), Expect = 8.121e-36 Identity = 73/170 (42.94%), Postives = 110/170 (64.71%), Query Frame = 3 Query: 222 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQLP 731 P++L+ +W K+R+E R ++RQIRDIQREE+ V++++KDAAK+ LA+E++RSRK V++LY +KA MNS+ M + +A+ R G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D ++ D +D++L I + P Sbjct: 12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAP 181
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHMP3_MOUSE (Charged multivesicular body protein 3 OS=Mus musculus GN=Vps24 PE=1 SV=3) HSP 1 Score: 150.599 bits (379), Expect = 8.121e-36 Identity = 73/170 (42.94%), Postives = 110/170 (64.71%), Query Frame = 3 Query: 222 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQLP 731 P++L+ +W K+R+E R ++RQIRDIQREE+ V++++KDAAK+ LA+E++RSRK V++LY +KA MNS+ M + +A+ R G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D ++ D +D++L I + P Sbjct: 12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAP 181
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHMP3_MACFA (Charged multivesicular body protein 3 OS=Macaca fascicularis GN=VPS24 PE=2 SV=3) HSP 1 Score: 150.599 bits (379), Expect = 8.121e-36 Identity = 73/170 (42.94%), Postives = 110/170 (64.71%), Query Frame = 3 Query: 222 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQLP 731 P++L+ +W K+R+E R ++RQIRDIQREE+ V++++KDAAK+ LA+E++RSRK V++LY +KA MNS+ M + +A+ R G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D ++ D +D++L I + P Sbjct: 12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIRATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAP 181
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHMP3_BOVIN (Charged multivesicular body protein 3 OS=Bos taurus GN=VPS24 PE=2 SV=4) HSP 1 Score: 150.599 bits (379), Expect = 8.121e-36 Identity = 73/170 (42.94%), Postives = 110/170 (64.71%), Query Frame = 3 Query: 222 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQLP 731 P++L+ +W K+R+E R ++RQIRDIQREE+ V++++KDAAK+ LA+E++RSRK V++LY +KA MNS+ M + +A+ R G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D ++ D +D++L I + P Sbjct: 12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAP 181
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHMP3_HUMAN (Charged multivesicular body protein 3 OS=Homo sapiens GN=VPS24 PE=1 SV=3) HSP 1 Score: 150.214 bits (378), Expect = 1.061e-35 Identity = 73/170 (42.94%), Postives = 110/170 (64.71%), Query Frame = 3 Query: 222 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQLP 731 P++L+ +W K+R+E R ++RQIRDIQREE+ V++++KDAAK+ LA+E++RSRK V++LY +KA MNS+ M + +A+ R G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D ++ D +D++L I + P Sbjct: 12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAP 181
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHMP3_XENLA (Charged multivesicular body protein 3 OS=Xenopus laevis GN=vps24 PE=2 SV=3) HSP 1 Score: 147.902 bits (372), Expect = 5.264e-35 Identity = 72/170 (42.35%), Postives = 110/170 (64.71%), Query Frame = 3 Query: 222 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQLP 731 P+ L+ +W K+R+E R I+RQIRDIQRE++ V+++IK++AK+ + + LA+E+V+S+K VN+LY +KA MNS+ M + +A+ R G L KS EVMK + NL+K PE+ ATM+E SKEM KAG+IEE + D + D +D++L + + P Sbjct: 12 PKDLVNEWSLKIRKEMRVIDRQIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVQSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKLPEIQATMRELSKEMMKAGIIEEMLEDTFEGMEDQDEMEEQAEMEIDRILFEVTAGALGKAP 181
BLAST of FC931337 vs. ExPASy Swiss-Prot
Match: CHMP3_DANRE (Charged multivesicular body protein 3 OS=Danio rerio GN=vps24 PE=2 SV=3) HSP 1 Score: 147.902 bits (372), Expect = 5.264e-35 Identity = 72/170 (42.35%), Postives = 110/170 (64.71%), Query Frame = 3 Query: 222 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDMSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTGIAGETAAQLP 731 P+ L+ +W K+R+E R I+RQIRDIQREE+ V+++IKDAAK+ LA+E+++S++ +N+LY +KAQMNS+ + + +++ R G L KS EVMK + +L+K PE+ ATM++ SKEM KAG+IEE + D ++ D VDK+L I + P Sbjct: 12 PKDLINEWSLKIRKEMRVIDRQIRDIQREEEKVKRSIKDAAKKGQKDVCIILAKEMIQSKRAINKLYASKAQMNSVLLSMKNQLSVLRVAGALQKSTEVMKAMQSLVKIPEIQATMRDLSKEMMKAGIIEEMLEDTLEGMDDEEEMEEAAEAEVDKILFEITAGALGKAP 181 The following BLAST results are available for this feature:
BLAST of FC931337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931337 ID=FC931337; Name=FC931337; organism=Citrus clementina; type=EST; length=733bpback to top |