EY665957

Overview
NameEY665957
Unique NameEY665957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.623e-13
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  274 AGTRSVSVSAAAAD---PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGILNTPSLVHSWGARV 567
            A T+ ++ SA+ +    P+R L+   F G  PP +L G  PGD+G+D  GL +DPE    N + E++HCRWAMLGA G   PELL   G+    ++    GA++
Sbjct:   44 ATTKKLTASASTSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 146          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.119e-13
Identity = 46/110 (41.82%), Postives = 61/110 (55.45%), Query Frame = 1
Query:  280 TRSVSVSAAAADP------NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETL------RWNVQSEIVHCRWAMLGAAGIFIPELLTILGILNTPSLVHSWGARVLP 573
            +R   V AAA  P      +RPLWF       +LDGSLPGD+GFDPLGL SDPE        RW    E+++ R+AMLGA G   PE L  +G++   + +  +   V+P
Sbjct:   35 SRKGLVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIP 143          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.615e-13
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 1
Query:  316 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGI 525
            P+R L+       PP +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL   G+
Sbjct:   52 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.615e-13
Identity = 38/86 (44.19%), Postives = 50/86 (58.14%), Query Frame = 1
Query:  274 AGTRSVSVSAAAADPNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGI 525
            A  + VS S+     +R L+       PP +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL   G+
Sbjct:   39 AKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.722e-13
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  283 RSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGI 525
            + VS S+    PNR  +   F G +P  +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL   G+
Sbjct:   43 KPVSSSSPWYGPNRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.722e-13
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1
Query:  349 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGI 525
            PP +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL   G+
Sbjct:   65 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGV 123          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.167e-13
Identity = 42/103 (40.78%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  283 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETL------RWNVQSEIVHCRWAMLGAAGIFIPELLTILGILNTPSLVHSWGARVLP 573
            R+ S        NR LWF       +LDG LPGDFGFDPLGL SDPE        +W    E+++ R+AMLGAAG   PE+L   G++   + +  +   V+P
Sbjct:   40 RAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIP 141          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.054e-13
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 1
Query:  319 NRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGI 525
            +RPL+   F GS PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL   G+
Sbjct:   53 DRPLYLGPFSGS-PPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGV 123          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.374e-12
Identity = 42/102 (41.18%), Postives = 59/102 (57.84%), Query Frame = 1
Query:  277 GTRSVSVSAAAA--DPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGILNTPSLVHSWGARV 567
            G +SV+ S  +    P+R L+   F G  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL   G+    ++    GA++
Sbjct:   50 GKKSVAASIDSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 150          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.374e-12
Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 1
Query:  316 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGI 525
            P+RP +        P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL   G+
Sbjct:   51 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGV 122          
The following BLAST results are available for this feature:
BLAST of EY665957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB2B_PINSY1.623e-1340.38Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB23_PEA2.119e-1341.82Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB22_MAIZE3.615e-1348.61Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_WHEAT3.615e-1344.19Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_NICPL4.722e-1346.43Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB21_SINAL4.722e-1354.24Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB13_SOLLC6.167e-1340.78Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_POLMU8.054e-1351.39Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB2A_PINSY1.374e-1241.18Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB21_SILPR1.374e-1247.22Chlorophyll a-b binding protein, chloroplastic (Fr... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-007-H06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665957 ID=EY665957; Name=EY665957; organism=Citrus sinensis; type=EST; length=904bp
CCGCCGGGTCCGGGCCCGGGATTCCCCGGGTCGACCCCCGCGTCCGATCT
TCTGTTCACTGCCCCTTGTTATTCTACTTTACACGCACCAAACGCCAGTC
ATAATTTTGCTGAAAGCCTTTGCCTGGTAGTAAAAATGGCTTCCGTTTGT
GCTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAGTAG
ATCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGCTGA
AATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAGTGAGT
GCGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGCAGCACTCC
TCCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATCCTC
TTGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCAGAA
ATTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCATTCC
GGAATTGTTAACAATACTTGGAATCCTCAACACTCCATCCCTGGTACACA
GCTGGGGAGCTAGAGTACTTCCCAGACACCACCACCCCTGGTCATTGTTG
AGAAGAAATTCATAAGGTGGGCAGAAGGGCAGACGGGGGGCCAACATTTT
ATACACCAGGGTGGGTGGAACACCTGACCGAACCTTCCCCATCAACCAGG
TTCCACCGCGACCGATGTGGGATACCCCAAGGGGGCTTTTGGTTTAAACC
ACCTTGGGGTTGGGGATCCCGGTTTCCCCCGAAAAAGGTCACGGGGGTGG
GGGGGACTGCGGGAGAATTCAAAATGGTAAAAATTGGCTTTGTTCTGGCT
TTTGTAGGGGGGTGCGCGTGCTTCCCTACACTATATTCATCTGCGAAAAT
CGAC
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