EY665957
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.608e-45 Identity = 100/186 (53.76%), Postives = 122/186 (65.59%), Query Frame = 1 Query: 190 QKSRSVAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGILNTPSLVHSWGARVLPRHHHPWSLLRRNS*GGQKGRRGANILYTRVGGTPDRTFPINQVP------PRPMWDTP 729 QK+ S+ GATKASF A G+RSV+VSA AADP+RPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPE+L+WN Q+E+VH RWAMLGAAGIFIPE LT +G+LNTPS ++ G + ++ G +GRR A+I+ T D FP N++ P +W P Sbjct: 21 QKNGSIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSW-YTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNT-DPIFPNNKLTGTDVGYPGGLWFDP 204
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 1.078e-41 Identity = 94/186 (50.54%), Postives = 115/186 (61.83%), Query Frame = 1 Query: 190 QKSRSVAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGILNTPSLVHSWGARVLPRHHHPWSLLRRNS*GGQKGRRGANILYTRVGGTPDRTFPINQVP------PRPMWDTP 729 +++ S+ G TKASF T RS + AADP+RPLWFPGSTPP WLDGSLPGDFGFDPLGL SDPE+LRWN Q+E+VHCRWAMLGAAGIFIPELLT +GILNTPS ++ G + ++ G +GRR A+I+ T D FP N++ P +W P Sbjct: 21 RRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSW-YTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNT-DPIFPNNKLTGTDVGYPGGLWFDP 204
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 4.425e-21 Identity = 43/69 (62.32%), Postives = 52/69 (75.36%), Query Frame = 1 Query: 331 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGILNTP 537 W PG P +L GSLPGD GFDPLGL DPE LRW VQ+E+V+ RWAMLG AG+ +PE+ T +GI+N P Sbjct: 56 WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVP 124 HSP 2 Score: 23.8682 bits (50), Expect = 4.425e-21 Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 2 Query: 542 WYTAGELEYFPDTTT 586 WY AG+ EYF ++T Sbjct: 126 WYAAGKEEYFASSST 140
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 3.628e-20 Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 1 Query: 286 SVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGILNTP 537 S S+ + + W PG P++L GSL GD GFDPLGL DPE L+W VQ+E+V+ RWAMLG AG+ +PE+ T +GI+N P Sbjct: 42 SAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVP 125 HSP 2 Score: 22.3274 bits (46), Expect = 3.628e-20 Identity = 7/15 (46.67%), Postives = 11/15 (73.33%), Query Frame = 2 Query: 542 WYTAGELEYFPDTTT 586 WY AG+ +YF ++T Sbjct: 127 WYDAGKEQYFASSST 141
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 4.409e-19 Identity = 46/85 (54.12%), Postives = 57/85 (67.06%), Query Frame = 1 Query: 283 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGILNTP 537 R V+V A + W PG P +LDGSL GD GFDPL L DPE LRW VQ+++V+ RWAMLG AG+ IPE+LT G++N P Sbjct: 26 RDVAVQAKGS------WLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAP 104
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 2.419e-17 Identity = 47/109 (43.12%), Postives = 61/109 (55.96%), Query Frame = 1 Query: 205 VAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGST------PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLT 513 ++G K+S + +R + V AAAA P + W P PEWLDGSLPGDFGFDPLGLG DP L+W ++E++H RWAML GIF+ + T Sbjct: 19 LSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKS-WIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWT 126
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 7.783e-16 Identity = 40/74 (54.05%), Postives = 48/74 (64.86%), Query Frame = 1 Query: 295 VSAAAADPNRPLWFPGS------TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFI 498 V+AAA P + W P PEWLDGSLPGDFGFDPLGLG DP L+W ++E++H RWAM GIF+ Sbjct: 44 VAAAAVAPKKS-WIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV 116
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 6.588e-15 Identity = 35/60 (58.33%), Postives = 40/60 (66.67%), Query Frame = 1 Query: 331 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELL 510 W PG P +LDGS PGDFGFD LGLG P L +SE++HCRWAML GI +PE L Sbjct: 49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL 108
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 8.605e-15 Identity = 40/81 (49.38%), Postives = 50/81 (61.73%), Query Frame = 1 Query: 274 AGTRSVSVSAAAADPNRPLWFPGS------TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFI 498 A + +V AAAA + W P PEWLDGSLPGD+GFDPLGLG DP L+W ++E++H RWAM GIF+ Sbjct: 39 ATPKRFTVLAAAAKKS---WIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV 116
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.124e-14 Identity = 36/60 (60.00%), Postives = 40/60 (66.67%), Query Frame = 1 Query: 331 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELL 510 WFPG P LDGS PGDFGFDPLGL + PE +SEI HCRWAML G+ +PE L Sbjct: 48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL 107 The following BLAST results are available for this feature:
BLAST of EY665957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >EY665957 ID=EY665957; Name=EY665957; organism=Citrus sinensis; type=EST; length=904bpback to top |