EY665957

Overview
NameEY665957
Unique NameEY665957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.608e-45
Identity = 100/186 (53.76%), Postives = 122/186 (65.59%), Query Frame = 1
Query:  190 QKSRSVAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGILNTPSLVHSWGARVLPRHHHPWSLLRRNS*GGQKGRRGANILYTRVGGTPDRTFPINQVP------PRPMWDTP 729
            QK+ S+ GATKASF            A  G+RSV+VSA AADP+RPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPE+L+WN Q+E+VH RWAMLGAAGIFIPE LT +G+LNTPS  ++ G +          ++     G  +GRR A+I+      T D  FP N++       P  +W  P
Sbjct:   21 QKNGSIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSW-YTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNT-DPIFPNNKLTGTDVGYPGGLWFDP 204          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.078e-41
Identity = 94/186 (50.54%), Postives = 115/186 (61.83%), Query Frame = 1
Query:  190 QKSRSVAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGILNTPSLVHSWGARVLPRHHHPWSLLRRNS*GGQKGRRGANILYTRVGGTPDRTFPINQVP------PRPMWDTP 729
            +++ S+ G TKASF             T   RS +    AADP+RPLWFPGSTPP WLDGSLPGDFGFDPLGL SDPE+LRWN Q+E+VHCRWAMLGAAGIFIPELLT +GILNTPS  ++ G +          ++     G  +GRR A+I+      T D  FP N++       P  +W  P
Sbjct:   21 RRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSW-YTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNT-DPIFPNNKLTGTDVGYPGGLWFDP 204          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.425e-21
Identity = 43/69 (62.32%), Postives = 52/69 (75.36%), Query Frame = 1
Query:  331 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGILNTP 537
            W PG   P +L GSLPGD GFDPLGL  DPE LRW VQ+E+V+ RWAMLG AG+ +PE+ T +GI+N P
Sbjct:   56 WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVP 124          

HSP 2 Score: 23.8682 bits (50), Expect = 4.425e-21
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 2
Query:  542 WYTAGELEYFPDTTT 586
            WY AG+ EYF  ++T
Sbjct:  126 WYAAGKEEYFASSST 140          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.628e-20
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 1
Query:  286 SVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGILNTP 537
            S   S+   +  +  W PG   P++L GSL GD GFDPLGL  DPE L+W VQ+E+V+ RWAMLG AG+ +PE+ T +GI+N P
Sbjct:   42 SAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVP 125          

HSP 2 Score: 22.3274 bits (46), Expect = 3.628e-20
Identity = 7/15 (46.67%), Postives = 11/15 (73.33%), Query Frame = 2
Query:  542 WYTAGELEYFPDTTT 586
            WY AG+ +YF  ++T
Sbjct:  127 WYDAGKEQYFASSST 141          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.409e-19
Identity = 46/85 (54.12%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  283 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGILNTP 537
            R V+V A  +      W PG   P +LDGSL GD GFDPL L  DPE LRW VQ+++V+ RWAMLG AG+ IPE+LT  G++N P
Sbjct:   26 RDVAVQAKGS------WLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAP 104          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.419e-17
Identity = 47/109 (43.12%), Postives = 61/109 (55.96%), Query Frame = 1
Query:  205 VAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGST------PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLT 513
            ++G  K+S              +  +R + V AAAA P +  W P          PEWLDGSLPGDFGFDPLGLG DP  L+W  ++E++H RWAML   GIF+ +  T
Sbjct:   19 LSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKS-WIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWT 126          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.783e-16
Identity = 40/74 (54.05%), Postives = 48/74 (64.86%), Query Frame = 1
Query:  295 VSAAAADPNRPLWFPGS------TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFI 498
            V+AAA  P +  W P          PEWLDGSLPGDFGFDPLGLG DP  L+W  ++E++H RWAM    GIF+
Sbjct:   44 VAAAAVAPKKS-WIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV 116          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.588e-15
Identity = 35/60 (58.33%), Postives = 40/60 (66.67%), Query Frame = 1
Query:  331 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELL 510
            W PG   P +LDGS PGDFGFD LGLG  P  L    +SE++HCRWAML   GI +PE L
Sbjct:   49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL 108          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.605e-15
Identity = 40/81 (49.38%), Postives = 50/81 (61.73%), Query Frame = 1
Query:  274 AGTRSVSVSAAAADPNRPLWFPGS------TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFI 498
            A  +  +V AAAA  +   W P          PEWLDGSLPGD+GFDPLGLG DP  L+W  ++E++H RWAM    GIF+
Sbjct:   39 ATPKRFTVLAAAAKKS---WIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV 116          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.124e-14
Identity = 36/60 (60.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query:  331 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELL 510
            WFPG   P  LDGS PGDFGFDPLGL + PE      +SEI HCRWAML   G+ +PE L
Sbjct:   48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL 107          
The following BLAST results are available for this feature:
BLAST of EY665957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB12_PETHY1.608e-4553.76Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC1.078e-4150.54Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_PEA4.425e-2162.32Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH3.628e-2051.19Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB120_HORVU4.409e-1954.12Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB4_SPIOL2.419e-1743.12Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4B_SOLLC7.783e-1654.05Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB11_SOLLC6.588e-1558.33Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB4A_SOLLC8.605e-1549.38Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB121_HORVU1.124e-1460.00Chlorophyll a-b binding protein 1B-21, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-007-H06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665957 ID=EY665957; Name=EY665957; organism=Citrus sinensis; type=EST; length=904bp
CCGCCGGGTCCGGGCCCGGGATTCCCCGGGTCGACCCCCGCGTCCGATCT
TCTGTTCACTGCCCCTTGTTATTCTACTTTACACGCACCAAACGCCAGTC
ATAATTTTGCTGAAAGCCTTTGCCTGGTAGTAAAAATGGCTTCCGTTTGT
GCTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAGTAG
ATCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGCTGA
AATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAGTGAGT
GCGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGCAGCACTCC
TCCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATCCTC
TTGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCAGAA
ATTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCATTCC
GGAATTGTTAACAATACTTGGAATCCTCAACACTCCATCCCTGGTACACA
GCTGGGGAGCTAGAGTACTTCCCAGACACCACCACCCCTGGTCATTGTTG
AGAAGAAATTCATAAGGTGGGCAGAAGGGCAGACGGGGGGCCAACATTTT
ATACACCAGGGTGGGTGGAACACCTGACCGAACCTTCCCCATCAACCAGG
TTCCACCGCGACCGATGTGGGATACCCCAAGGGGGCTTTTGGTTTAAACC
ACCTTGGGGTTGGGGATCCCGGTTTCCCCCGAAAAAGGTCACGGGGGTGG
GGGGGACTGCGGGAGAATTCAAAATGGTAAAAATTGGCTTTGTTCTGGCT
TTTGTAGGGGGGTGCGCGTGCTTCCCTACACTATATTCATCTGCGAAAAT
CGAC
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