EY665957

Overview
NameEY665957
Unique NameEY665957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.794e-12
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  271 TAGT-RSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGI 525
            TAG  ++V  S+    P+R  +   F G +P  +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL   G+
Sbjct:   38 TAGKPKTVQSSSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.343e-12
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1
Query:  277 GTRSVSVSAAAA--DPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGILNTPSLVHSWGARV 567
            G +SV+ S  +    P+R ++   F G  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL   G+    ++    GA++
Sbjct:   50 GRKSVAASIDSPWYGPDRVMYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 150          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.343e-12
Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 1
Query:  280 TRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGI 525
            T+ VS  +    P+R  +   F G  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL+  G+
Sbjct:   38 TKQVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 121          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.343e-12
Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = 1
Query:  316 PNRPLWF-PGSTP-PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGI 525
            P+RP +  P S   P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+L+  G+
Sbjct:   52 PDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGV 123          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.343e-12
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  280 TRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGI 525
            ++SVS  +    P+R  +   F G  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL+  G+
Sbjct:   30 SKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 113          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.060e-12
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  352 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGI 525
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL   G+
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.060e-12
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  352 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGI 525
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL   G+
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 123          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.060e-12
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  352 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGI 525
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL   G+
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.060e-12
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  352 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGI 525
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL   G+
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 125          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.060e-12
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  352 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGI 525
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL   G+
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 124          
The following BLAST results are available for this feature:
BLAST of EY665957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB2A_SPIOL1.794e-1244.94Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_PYRPY2.343e-1240.20Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB23_SOYBN2.343e-1244.71Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_GOSHI2.343e-1248.61Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB21_CUCSA2.343e-1244.71Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2G_SOLLC3.060e-1253.45Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2B_SOLLC3.060e-1253.45Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB27_TOBAC3.060e-1253.45Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_TOBAC3.060e-1253.45Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB25_NICPL3.060e-1253.45Chlorophyll a-b binding protein E, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-007-H06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665957 ID=EY665957; Name=EY665957; organism=Citrus sinensis; type=EST; length=904bp
CCGCCGGGTCCGGGCCCGGGATTCCCCGGGTCGACCCCCGCGTCCGATCT
TCTGTTCACTGCCCCTTGTTATTCTACTTTACACGCACCAAACGCCAGTC
ATAATTTTGCTGAAAGCCTTTGCCTGGTAGTAAAAATGGCTTCCGTTTGT
GCTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAGTAG
ATCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGCTGA
AATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAGTGAGT
GCGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGCAGCACTCC
TCCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATCCTC
TTGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCAGAA
ATTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCATTCC
GGAATTGTTAACAATACTTGGAATCCTCAACACTCCATCCCTGGTACACA
GCTGGGGAGCTAGAGTACTTCCCAGACACCACCACCCCTGGTCATTGTTG
AGAAGAAATTCATAAGGTGGGCAGAAGGGCAGACGGGGGGCCAACATTTT
ATACACCAGGGTGGGTGGAACACCTGACCGAACCTTCCCCATCAACCAGG
TTCCACCGCGACCGATGTGGGATACCCCAAGGGGGCTTTTGGTTTAAACC
ACCTTGGGGTTGGGGATCCCGGTTTCCCCCGAAAAAGGTCACGGGGGTGG
GGGGGACTGCGGGAGAATTCAAAATGGTAAAAATTGGCTTTGTTCTGGCT
TTTGTAGGGGGGTGCGCGTGCTTCCCTACACTATATTCATCTGCGAAAAT
CGAC
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