EY665957

Overview
NameEY665957
Unique NameEY665957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.818e-12
Identity = 34/81 (41.98%), Postives = 43/81 (53.09%), Query Frame = 1
Query:  268 ATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELL 510
            A   T     +++ A   R LWFP   PP +L G   GD GFDP GL +DP T      +E+ HCR +ML   G  +PELL
Sbjct:  353 ANITTNLAMFASSGAKEERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL 433          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.818e-12
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  274 AGTRSVSVSAAAA------DPNRPLWF-PGST-PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLT 513
            AGT+    + A +       P+R  W  P ST  P +L G  PGD+G+D  GL +DPET +   + E++H RWA+LGA GI  PELL+
Sbjct:   22 AGTKQTKAAPAKSAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLS 109          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.818e-12
Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 1
Query:  349 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGI 525
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL   G+
Sbjct:   61 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 119          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.818e-12
Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 1
Query:  349 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGI 525
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL   G+
Sbjct:   45 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 103          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.818e-12
Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 1
Query:  349 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGI 525
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL   G+
Sbjct:   65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 123          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.904e-12
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  352 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGI 525
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL    G+
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGV 124          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.519e-11
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 1
Query:  334 FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGILNTPSLVHSWGARV 567
            F G TP  +L+G   GD+G+D  GL SDPET   N + E++H RWAMLGA G   PELL   G+    ++    GA++
Sbjct:   64 FSGETP-SYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQI 140          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.519e-11
Identity = 36/82 (43.90%), Postives = 46/82 (56.10%), Query Frame = 1
Query:  316 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGILNTPSLV 546
            P+R ++ P      S  PE+L+G + GD+G+DP GLG  PE        E++H RWAMLGAAG  IPE L   G    P  V
Sbjct:   65 PDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAV 146          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.984e-11
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 1
Query:  316 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGILNTPSLVHSWGARV 567
            P+RP +        P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PE+L+  G+    ++    GA++
Sbjct:   50 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQI 135          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.984e-11
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 1
Query:  316 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGILNTPSLVHSWGARV 567
            P+RP +        P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PE+L+  G+    ++    GA++
Sbjct:   50 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQI 135          
The following BLAST results are available for this feature:
BLAST of EY665957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
LH18_EUGGR6.818e-1241.98Light-harvesting complex I LH38 proteins (Fragment... [more]
CB2_CHLMO6.818e-1243.18Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_ORYSJ6.818e-1252.54Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SOYBN6.818e-1252.54Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_ORYSJ6.818e-1252.54Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB24_PETSP8.904e-1251.72Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB2_PHYPA1.519e-1144.87Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB26_ARATH1.519e-1143.90Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB23_ORYSJ1.984e-1139.53Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.984e-1139.53Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-007-H06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665957 ID=EY665957; Name=EY665957; organism=Citrus sinensis; type=EST; length=904bp
CCGCCGGGTCCGGGCCCGGGATTCCCCGGGTCGACCCCCGCGTCCGATCT
TCTGTTCACTGCCCCTTGTTATTCTACTTTACACGCACCAAACGCCAGTC
ATAATTTTGCTGAAAGCCTTTGCCTGGTAGTAAAAATGGCTTCCGTTTGT
GCTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAGTAG
ATCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGCTGA
AATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAGTGAGT
GCGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGCAGCACTCC
TCCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATCCTC
TTGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCAGAA
ATTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCATTCC
GGAATTGTTAACAATACTTGGAATCCTCAACACTCCATCCCTGGTACACA
GCTGGGGAGCTAGAGTACTTCCCAGACACCACCACCCCTGGTCATTGTTG
AGAAGAAATTCATAAGGTGGGCAGAAGGGCAGACGGGGGGCCAACATTTT
ATACACCAGGGTGGGTGGAACACCTGACCGAACCTTCCCCATCAACCAGG
TTCCACCGCGACCGATGTGGGATACCCCAAGGGGGCTTTTGGTTTAAACC
ACCTTGGGGTTGGGGATCCCGGTTTCCCCCGAAAAAGGTCACGGGGGTGG
GGGGGACTGCGGGAGAATTCAAAATGGTAAAAATTGGCTTTGTTCTGGCT
TTTGTAGGGGGGTGCGCGTGCTTCCCTACACTATATTCATCTGCGAAAAT
CGAC
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