EY665957

Overview
NameEY665957
Unique NameEY665957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.419e-11
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  352 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGI 525
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL   G+
Sbjct:   65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 122          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.419e-11
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  352 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGI 525
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL   G+
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 124          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.419e-11
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  352 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGI 525
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL   G+
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 124          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.419e-11
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 1
Query:  316 PNRPLWF-PGSTP-PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTILGI 525
            P+RP +  P S   P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL   G+
Sbjct:   52 PDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGV 123          
BLAST of EY665957 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.845e-11
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = 1
Query:  271 TAGTRSVSVSAAAAD---PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLT 513
            T   R  +V  AA +   P+R  +   F  +  PE+L G  PGD+G+D  GL +DP+T     + E++H RWA+LGA GI  PELL+
Sbjct:   18 TRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLS 104          
The following BLAST results are available for this feature:
BLAST of EY665957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB23_APIGR4.419e-1151.72Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_ARATH4.419e-1151.72Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH4.419e-1151.72Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB215_PEA4.419e-1148.61Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB2_DUNTE9.845e-1141.38Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-007-H06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665957 ID=EY665957; Name=EY665957; organism=Citrus sinensis; type=EST; length=904bp
CCGCCGGGTCCGGGCCCGGGATTCCCCGGGTCGACCCCCGCGTCCGATCT
TCTGTTCACTGCCCCTTGTTATTCTACTTTACACGCACCAAACGCCAGTC
ATAATTTTGCTGAAAGCCTTTGCCTGGTAGTAAAAATGGCTTCCGTTTGT
GCTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAGTAG
ATCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGCTGA
AATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAGTGAGT
GCGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGCAGCACTCC
TCCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATCCTC
TTGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCAGAA
ATTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCATTCC
GGAATTGTTAACAATACTTGGAATCCTCAACACTCCATCCCTGGTACACA
GCTGGGGAGCTAGAGTACTTCCCAGACACCACCACCCCTGGTCATTGTTG
AGAAGAAATTCATAAGGTGGGCAGAAGGGCAGACGGGGGGCCAACATTTT
ATACACCAGGGTGGGTGGAACACCTGACCGAACCTTCCCCATCAACCAGG
TTCCACCGCGACCGATGTGGGATACCCCAAGGGGGCTTTTGGTTTAAACC
ACCTTGGGGTTGGGGATCCCGGTTTCCCCCGAAAAAGGTCACGGGGGTGG
GGGGGACTGCGGGAGAATTCAAAATGGTAAAAATTGGCTTTGTTCTGGCT
TTTGTAGGGGGGTGCGCGTGCTTCCCTACACTATATTCATCTGCGAAAAT
CGAC
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