FC920826

Overview
NameFC920826
Unique NameFC920826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920826_ssr43 microsatellite FC920826_ssr43:43..54. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12222 contig Ccv1_Contig12222:43..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920826 vs. ExPASy Swiss-Prot
Match: RBP9X_DROME (Ran-binding proteins 9/10 homolog OS=Drosophila melanogaster GN=RanBPM PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.267e-34
Identity = 73/202 (36.14%), Postives = 107/202 (52.97%), Query Frame = 2
Query:  119 VSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFD-----LKGVRSTERMKQQMTIEKISLPPNVSYGLVRSLLTHYGY 709
            +S + L V Y  V     D   V+   P P    +YYFE+ +   G  G + IG T++ F+M R PGW+  S GYHGDDG  +   G G+ +GPTFTT D +G  +N+ +   F+TKNG  +G  ++D+   L+PT+ + +  EEV  NFGQ+ F FD     +K +RS    K       +  P N+   LV + L H  +
Sbjct:  433 LSQNNLRVTYKGVGKQHSDAASVRTAYPIPSSCGLYYFEVRIISKGRNGYMGIGLTAQQFRMNRLPGWDKQSYGYHGDDGNSFSSSGNGQTYGPTFTTGDVIGCCVNFVNNTCFYTKNGVDLGIAFRDLPTKLYPTVGLQTPGEEVDANFGQEPFKFDKIVDMMKEMRSNVLRKIDRYPHLLETPENLMNRLVSTYLVHNAF 634          
BLAST of FC920826 vs. ExPASy Swiss-Prot
Match: RBP10_DANRE (Ran-binding protein 10 OS=Danio rerio GN=ranbp10 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.051e-32
Identity = 71/206 (34.47%), Postives = 107/206 (51.94%), Query Frame = 2
Query:  110 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKGVRSTERMKQQMTIEKISLPPN------VSYGLVRSLLTHYGY 709
            ++ +S + L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ+ F FD++   S  R K    I +  +         V   +V S L H+GY
Sbjct:   53 YIGLSQNNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLGVAFTDLPPNLYPTVGLQTPGEIVDANFGQQPFVFDIEDYMSEWRAKIHSMIARFPIGERLGDWQAVLQNMVSSYLVHHGY 258          
BLAST of FC920826 vs. ExPASy Swiss-Prot
Match: RBP10_MOUSE (Ran-binding protein 10 OS=Mus musculus GN=Ranbp10 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.793e-32
Identity = 71/206 (34.47%), Postives = 106/206 (51.46%), Query Frame = 2
Query:  110 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKGVRSTERMKQQMTIEKISLPPN------VSYGLVRSLLTHYGY 709
            ++ +S   L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ+ F FD++      R K Q T+    +         V   +V S L H+GY
Sbjct:   93 YIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLGIAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGTVHGFPISARLGEWQAVLQNMVSSYLVHHGY 298          
BLAST of FC920826 vs. ExPASy Swiss-Prot
Match: RBP10_HUMAN (Ran-binding protein 10 OS=Homo sapiens GN=RANBP10 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.341e-32
Identity = 71/206 (34.47%), Postives = 106/206 (51.46%), Query Frame = 2
Query:  110 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKGVRSTERMKQQMTIEKISLPPN------VSYGLVRSLLTHYGY 709
            ++ +S   L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ+ F FD++      R K Q T+    +         V   +V S L H+GY
Sbjct:   65 YIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLGIAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGTVHCFPISARLGEWQAVLQNMVSSYLVHHGY 270          
BLAST of FC920826 vs. ExPASy Swiss-Prot
Match: RBP10_BOVIN (Ran-binding protein 10 OS=Bos taurus GN=RANBP10 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.341e-32
Identity = 71/206 (34.47%), Postives = 106/206 (51.46%), Query Frame = 2
Query:  110 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKGVRSTERMKQQMTIEKISLPPN------VSYGLVRSLLTHYGY 709
            ++ +S   L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ+ F FD++      R K Q T+    +         V   +V S L H+GY
Sbjct:   65 YIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLGIAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGTVHCFPISARLGEWQAVLQNMVSSYLVHHGY 270          
BLAST of FC920826 vs. ExPASy Swiss-Prot
Match: RANB9_MOUSE (Ran-binding protein 9 OS=Mus musculus GN=Ranbp9 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.812e-32
Identity = 70/206 (33.98%), Postives = 106/206 (51.46%), Query Frame = 2
Query:  110 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKGVRSTERMKQQMTIEKISLP------PNVSYGLVRSLLTHYGY 709
            ++ +S + L V Y        D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ  F FD++      R K Q  I++  +         +   +V S L H+GY
Sbjct:  102 YIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPPNLYPTVGLQTPGEVVDANFGQHPFVFDIEDYMREWRTKIQAQIDRFPIGDREGEWQTMIQKMVSSYLVHHGY 307          
BLAST of FC920826 vs. ExPASy Swiss-Prot
Match: RANB9_HUMAN (Ran-binding protein 9 OS=Homo sapiens GN=RANBP9 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.812e-32
Identity = 70/206 (33.98%), Postives = 106/206 (51.46%), Query Frame = 2
Query:  110 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKGVRSTERMKQQMTIEKISLP------PNVSYGLVRSLLTHYGY 709
            ++ +S + L V Y        D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ  F FD++      R K Q  I++  +         +   +V S L H+GY
Sbjct:  177 YIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPPNLYPTVGLQTPGEVVDANFGQHPFVFDIEDYMREWRTKIQAQIDRFPIGDREGEWQTMIQKMVSSYLVHHGY 382          
BLAST of FC920826 vs. ExPASy Swiss-Prot
Match: RANB9_XENLA (Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.589e-31
Identity = 69/203 (33.99%), Postives = 105/203 (51.72%), Query Frame = 2
Query:  110 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKGVRSTERMKQQMTIEKISLP---PNVSYGLVRSLLTHYGY 709
            +L +S   L V Y        D   V++  P P    ++YFE+ +   G  G + IG +++   + R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N      F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ  F FD++      R K Q  IE+  +     ++   +V S L H+GY
Sbjct:   32 YLGLSHGNLRVHYKGHGKTSKDAASVRSTHPIPAACGIFYFEVKIISKGRDGYMGIGLSTQGVNLNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLIDNTCFYTKNGHSLGIAFTDLPPNLYPTVGLQTPGEVVDANFGQSPFVFDIEDYIREWRSKIQAQIERFPVAGEWQSMIQRMVSSYLVHHGY 234          
BLAST of FC920826 vs. ExPASy Swiss-Prot
Match: RANB9_DANRE (Ran-binding protein 9 OS=Danio rerio GN=ranbp9 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.381e-31
Identity = 70/206 (33.98%), Postives = 105/206 (50.97%), Query Frame = 2
Query:  110 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKGVRSTERMKQQMTIEKISLPPN------VSYGLVRSLLTHYGY 709
            ++ +S + L V Y        D   V+A  P P    VYYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ  F FD++      R K Q  I++  +         +   +V S L H+ Y
Sbjct:   59 YIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAACGVYYFEVKIISKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPPNLYPTVGLQTPGEVVDANFGQHPFVFDIEDYMREWRTKIQSQIDRFPIGEREGEWQAMIQKMVASYLVHHSY 264          
BLAST of FC920826 vs. ExPASy Swiss-Prot
Match: RANB9_XENTR (Ran-binding protein 9 OS=Xenopus tropicalis GN=ranbp9 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.416e-31
Identity = 69/203 (33.99%), Postives = 105/203 (51.72%), Query Frame = 2
Query:  110 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKGVRSTERMKQQMTIEKISLP---PNVSYGLVRSLLTHYGY 709
            +L +S   L V Y        D   V++  P P    ++YFE+ +   G  G + IG +++   + R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N      F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ  F FD++      R K Q  IE+  +     ++   +V S L H+GY
Sbjct:   32 YLGLSHGNLRVHYKGHGKTSKDAASVRSTHPIPAACGIFYFEVKIISKGRDGYMGIGLSTQGVNLSRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLIDNTCFYTKNGHSLGIAFTDLPPNLYPTVGLQTPGEVVDANFGQSPFVFDIEDYIREWRTKIQAQIERFPVGGEWQSMIQRMVSSYLVHHGY 234          
The following BLAST results are available for this feature:
BLAST of FC920826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RBP9X_DROME3.267e-3436.14Ran-binding proteins 9/10 homolog OS=Drosophila me... [more]
RBP10_DANRE1.051e-3234.47Ran-binding protein 10 OS=Danio rerio GN=ranbp10 P... [more]
RBP10_MOUSE1.793e-3234.47Ran-binding protein 10 OS=Mus musculus GN=Ranbp10 ... [more]
RBP10_HUMAN2.341e-3234.47Ran-binding protein 10 OS=Homo sapiens GN=RANBP10 ... [more]
RBP10_BOVIN2.341e-3234.47Ran-binding protein 10 OS=Bos taurus GN=RANBP10 PE... [more]
RANB9_MOUSE6.812e-3233.98Ran-binding protein 9 OS=Mus musculus GN=Ranbp9 PE... [more]
RANB9_HUMAN6.812e-3233.98Ran-binding protein 9 OS=Homo sapiens GN=RANBP9 PE... [more]
RANB9_XENLA2.589e-3133.99Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 ... [more]
RANB9_DANRE3.381e-3133.98Ran-binding protein 9 OS=Danio rerio GN=ranbp9 PE=... [more]
RANB9_XENTR4.416e-3133.99Ran-binding protein 9 OS=Xenopus tropicalis GN=ran... [more]

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Properties
Property NameValue
Genbank descriptionC32013E06EF RVDevelop1 Citrus clementina cDNA clone C32013E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920826 ID=FC920826; Name=FC920826; organism=Citrus clementina; type=EST; length=710bp
GGCGCTGGCCCGGGCTTCTTCGCGCTCGATGGGCGGAAAGCGGGAGGAGG
AGGATTTTGAGGAAGAAGAGGTGCCGACGGAGCTGAACACGATCAACAGC
TCTGGAGGGTTCCTGGTGGTTTCGCCGGATAAGTTGTCGGTCAAGTACAC
TAGCGTCAATCTGCACGGCCATGATGTCGGCGTCGTCCAAGCTAACAAGC
CGGCCCCTGTTAAGCGGCTTGTTTATTACTTTGAGATTTACGTGGAGGAC
GCTGGTGCCAAGGGCCAGATTGCCATTGGATTTACCAGTGAGTCTTTCAA
GATGCGGAGGCAACCAGGGTGGGAAGCGAACAGTTGTGGATACCATGGGG
ATGATGGATTGCTTTATCGTGGACAAGGAAAGGGAGAGGCCTTTGGCCCT
ACGTTTACAACTAATGATACTGTTGGTGGTGGTATTAACTATGCTTCACA
GGAATTTTTTTTCACTAAAAATGGTTCATTAGTAGGAGCAGTGTACAAGG
ACATCAAGGGTCCCTTGTTTCCGACCATTGCTGTTCACAGCCAAAACGAG
GAGGTTCTTGTCAACTTCGGCCAGAAAAAATTTGCTTTTGATCTTAAAGG
AGTACGAAGCACAGAGAGGATGAAGCAACAAATGACAATTGAAAAGATTT
CACTACCCCCTAATGTCAGTTATGGACTTGTTCGCTCCCTACTTACACAT
TATGGATATG
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