FC920896

Overview
NameFC920896
Unique NameFC920896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length412
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10358 contig Ccv1_Contig10358:12..423. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920896 vs. ExPASy Swiss-Prot
Match: PP1_MEDVA (Serine/threonine-protein phosphatase PP1 OS=Medicago varia GN=PP1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.411e-17
Identity = 42/52 (80.77%), Postives = 49/52 (94.23%), Query Frame = 1
Query:  256 MDETVLDDIIRRLLDAKNGRTTKQVQLTEAEIRQLCAASKEIFLSQPNLLEL 411
            MD+TVLDDII++L+ AKNGRTTKQV LTEA+IRQLC ++KEIFLSQPNLLEL
Sbjct:    1 MDDTVLDDIIKKLVSAKNGRTTKQVHLTEADIRQLCTSAKEIFLSQPNLLEL 52          
BLAST of FC920896 vs. ExPASy Swiss-Prot
Match: PP16_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 6 OS=Arabidopsis thaliana GN=TOPP6 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.361e-17
Identity = 42/52 (80.77%), Postives = 45/52 (86.54%), Query Frame = 1
Query:  256 MDETVLDDIIRRLLDAKNGRTTKQVQLTEAEIRQLCAASKEIFLSQPNLLEL 411
            MDET+LDDIIRRLL   NGRT KQ Q+TE EIRQLC ASKE+FLSQPNLLEL
Sbjct:    1 MDETLLDDIIRRLLATNNGRTVKQAQITETEIRQLCLASKEVFLSQPNLLEL 52          
BLAST of FC920896 vs. ExPASy Swiss-Prot
Match: PP13_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 3 OS=Arabidopsis thaliana GN=TOPP3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.011e-15
Identity = 37/52 (71.15%), Postives = 49/52 (94.23%), Query Frame = 1
Query:  256 MDETVLDDIIRRLLDAKNGRTTKQVQLTEAEIRQLCAASKEIFLSQPNLLEL 411
            M+++V+DD+I+RLL AKNG+TTKQVQLTEAEI+ LC+ +K+IFL+QPNLLEL
Sbjct:    1 MEDSVVDDVIKRLLGAKNGKTTKQVQLTEAEIKHLCSTAKQIFLTQPNLLEL 52          
BLAST of FC920896 vs. ExPASy Swiss-Prot
Match: PP1_ORYSJ (Serine/threonine-protein phosphatase PP1 OS=Oryza sativa subsp. japonica GN=Os03g0268000 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 1
Query:  256 MDETVLDDIIRRLLDAKNGRTTKQVQLTEAEIRQLCAASKEIFLSQPNLLEL 411
            MD  +LDDIIRRLL+ +  R  KQVQL+E+EIRQLC  S+EIFLSQPNLLEL
Sbjct:   15 MDAVLLDDIIRRLLEVRTARPGKQVQLSESEIRQLCTVSREIFLSQPNLLEL 66          
BLAST of FC920896 vs. ExPASy Swiss-Prot
Match: PP12_TOBAC (Serine/threonine-protein phosphatase PP1 isozyme 2 OS=Nicotiana tabacum GN=NPP2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.463e-14
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 1
Query:  256 MDETVLDDIIRRLLDAKNGRTTKQVQLTEAEIRQLCAASKEIFLSQPNLLEL 411
            ++  VLDDII RLL+ +N RT +QVQL+EAEIR LC ASKEIFL QPNLLEL
Sbjct:    8 IEPAVLDDIINRLLEFRNARTVRQVQLSEAEIRSLCTASKEIFLHQPNLLEL 59          
BLAST of FC920896 vs. ExPASy Swiss-Prot
Match: PP11_TOBAC (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Nicotiana tabacum GN=NPP1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.614e-13
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 1
Query:  253 LMDETVLDDIIRRLLDAKNGRTTKQVQLTEAEIRQLCAASKEIFLSQPNLLEL 411
            L++  VLDDII RLL+ +N RT +QVQL+EAEIR LC+AS+EIFL QPNLL+L
Sbjct:   14 LIEAGVLDDIINRLLEFRNARTVRQVQLSEAEIRSLCSASREIFLQQPNLLDL 66          
BLAST of FC920896 vs. ExPASy Swiss-Prot
Match: PP1_MAIZE (Serine/threonine-protein phosphatase PP1 OS=Zea mays GN=PP1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.696e-13
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 1
Query:  256 MDETVLDDIIRRLLDAKNGRTTKQVQLTEAEIRQLCAASKEIFLSQPNLLEL 411
            MD  +LDD+IRRLL+ KN +  K  QL+E+EI+QLCAA+KEIFL QPNLLEL
Sbjct:    1 MDPALLDDVIRRLLEVKNLKPGKNAQLSESEIKQLCAAAKEIFLQQPNLLEL 52          
BLAST of FC920896 vs. ExPASy Swiss-Prot
Match: PP11_ACECL (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.044e-12
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 1
Query:  256 MDETVLDDIIRRLLDAKNGRTTKQVQLTEAEIRQLCAASKEIFLSQPNLLEL 411
            MDE+ +DD+I RLL+ +N R  KQVQLTE+EIR LC  SKEI   QPNLLEL
Sbjct:    1 MDESTVDDVIERLLEVRNNRPGKQVQLTESEIRLLCLTSKEILSEQPNLLEL 52          
BLAST of FC920896 vs. ExPASy Swiss-Prot
Match: PP12_ACECL (Serine/threonine-protein phosphatase PP1 isozyme 2 OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.976e-12
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  256 MDETVLDDIIRRLLDAKNGRTTKQVQLTEAEIRQLCAASKEIFLSQPNLLEL 411
            M+E+ +DD+I RLL+ +N R  KQV L E EIRQLC  +K++F+SQPNLLEL
Sbjct:    1 MEESAVDDVIERLLEVRNNRPGKQVNLAEGEIRQLCLTAKDVFMSQPNLLEL 52          
BLAST of FC920896 vs. ExPASy Swiss-Prot
Match: PP11_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Arabidopsis thaliana GN=TOPP1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.192e-12
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 1
Query:  256 MDETVLDDIIRRLLDAKNGR--TTKQVQLTEAEIRQLCAASKEIFLSQPNLLEL 411
            M+  VLDDIIRRL++ +N R  + KQV L+E EIRQLCA SKEIFL QPNLLEL
Sbjct:   15 MEPAVLDDIIRRLVEFRNTRPGSGKQVHLSEGEIRQLCAVSKEIFLQQPNLLEL 68          
The following BLAST results are available for this feature:
BLAST of FC920896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PP1_MEDVA1.411e-1780.77Serine/threonine-protein phosphatase PP1 OS=Medica... [more]
PP16_ARATH5.361e-1780.77Serine/threonine-protein phosphatase PP1 isozyme 6... [more]
PP13_ARATH1.011e-1571.15Serine/threonine-protein phosphatase PP1 isozyme 3... [more]
PP1_ORYSJ7.245e-1471.15Serine/threonine-protein phosphatase PP1 OS=Oryza ... [more]
PP12_TOBAC9.463e-1471.15Serine/threonine-protein phosphatase PP1 isozyme 2... [more]
PP11_TOBAC1.614e-1367.92Serine/threonine-protein phosphatase PP1 isozyme 1... [more]
PP1_MAIZE4.696e-1367.31Serine/threonine-protein phosphatase PP1 OS=Zea ma... [more]
PP11_ACECL3.044e-1265.38Serine/threonine-protein phosphatase PP1 isozyme 1... [more]
PP12_ACECL3.976e-1259.62Serine/threonine-protein phosphatase PP1 isozyme 2... [more]
PP11_ARATH5.192e-1268.52Serine/threonine-protein phosphatase PP1 isozyme 1... [more]

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Properties
Property NameValue
Genbank descriptionC32014E02EF RVDevelop1 Citrus clementina cDNA clone C32014E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920896 ID=FC920896; Name=FC920896; organism=Citrus clementina; type=EST; length=412bp
ATCATTCATCTCACCTATGACCTATATCCTCTTTAACTCCGCCAACTTCA
TCCACCGAGCGGGAAATGGCCGCCAACGATTCTCTCAATAATATGCCAAA
CTCCCCTTTCTCCGTCAACGGAATCTGTTGAATCCGAGACTCAACAAATC
TAATACTCGGTTTTATAACACCGTCAGTATCTGATTTTATTCTTATTTTA
GAAACATAAATTTCTAGGGTTTGTTTTATTTCGATATAAGTATTTGTGTT
TTTTGATGGACGAGACTGTGCTTGATGATATAATACGACGGCTCCTTGAT
GCGAAGAATGGGAGGACGACGAAGCAGGTGCAGCTCACGGAGGCTGAAAT
ACGGCAGCTTTGTGCTGCGTCCAAGGAGATATTCCTTAGCCAGCCTAATC
TTCTCGAGCTTG
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