CB305113

Overview
NameCB305113
Unique NameCB305113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3326 contig Csv1_Contig3326:165..835. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305113 vs. ExPASy Swiss-Prot
Match: RPB7_SOYBN (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.304e-70
Identity = 128/137 (93.43%), Postives = 132/137 (96.35%), Query Frame = -3
Query:  259 GRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYPTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGPIKDDFLGVINDPTTI 669
            GRHGFVVA+T +ENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVV+MVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNY TSDGSVKIQKDSEVRLKIIGTRVDA EIFCIG IKDDFLGVINDP T+
Sbjct:   40 GRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV 176          
BLAST of CB305113 vs. ExPASy Swiss-Prot
Match: RPB7_ARATH (DNA-directed RNA polymerase II subunit RPB7 OS=Arabidopsis thaliana GN=RPB19 PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.180e-65
Identity = 119/134 (88.81%), Postives = 126/134 (94.03%), Query Frame = -3
Query:  268 GRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYPTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGPIKDDFLGVINDP 669
            GRHGFVVAIT ++ IGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVV++VNKMGFFAEAGPVQIFVS HLIPDDMEFQ+GDMPNY TSDGSVKIQK+ EVRLKIIGTRVDA  IFC+G IKDDFLGVINDP
Sbjct:   40 GRHGFVVAITGIDTIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQAGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDP 173          
BLAST of CB305113 vs. ExPASy Swiss-Prot
Match: RPB7_RAT (DNA-directed RNA polymerase II subunit RPB7 OS=Rattus norvegicus GN=Polr2g PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.145e-39
Identity = 71/133 (53.38%), Postives = 103/133 (77.44%), Query Frame = -3
Query:  274 GRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYPTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGPIKDDFLGVIN 669
            G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+  F+S H IP +MEF  + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG + DD+LG+++
Sbjct:   40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172          
BLAST of CB305113 vs. ExPASy Swiss-Prot
Match: RPB7_MOUSE (DNA-directed RNA polymerase II subunit RPB7 OS=Mus musculus GN=Polr2g PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.145e-39
Identity = 71/133 (53.38%), Postives = 103/133 (77.44%), Query Frame = -3
Query:  274 GRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYPTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGPIKDDFLGVIN 669
            G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+  F+S H IP +MEF  + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG + DD+LG+++
Sbjct:   40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172          
BLAST of CB305113 vs. ExPASy Swiss-Prot
Match: RPB7_HUMAN (DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens GN=POLR2G PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.145e-39
Identity = 71/133 (53.38%), Postives = 103/133 (77.44%), Query Frame = -3
Query:  274 GRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYPTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGPIKDDFLGVIN 669
            G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+  F+S H IP +MEF  + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG + DD+LG+++
Sbjct:   40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172          
BLAST of CB305113 vs. ExPASy Swiss-Prot
Match: RPB7_DANRE (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio GN=polr2g PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.145e-39
Identity = 72/133 (54.14%), Postives = 103/133 (77.44%), Query Frame = -3
Query:  274 GRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYPTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGPIKDDFLGVIN 669
            G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+  F+S H IP +MEF  + + P Y T D  V IQ+D E+RLKI+GTRVD  +IF IG + DD+LG+++
Sbjct:   40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172          
BLAST of CB305113 vs. ExPASy Swiss-Prot
Match: RPB7_BOVIN (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus GN=POLR2G PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.145e-39
Identity = 71/133 (53.38%), Postives = 103/133 (77.44%), Query Frame = -3
Query:  274 GRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYPTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGPIKDDFLGVIN 669
            G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+  F+S H IP +MEF  + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG + DD+LG+++
Sbjct:   40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172          
BLAST of CB305113 vs. ExPASy Swiss-Prot
Match: RPB7_DICDI (DNA-directed RNA polymerase II subunit rpb7 OS=Dictyostelium discoideum GN=polr2g PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.655e-37
Identity = 74/132 (56.06%), Postives = 101/132 (76.52%), Query Frame = -3
Query:  277 GRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQS-GDMPNYPTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGPIKDDFLGVI 669
            GR+GF++ ITSV+ + KG + + +G+V F VKY+ ++F+PFKGE+L+A+V+ V  +GFFAEAGP+ IFVS  LIP DM F +   +P + + DGS KI KD EVRL+I GTRVDA EIF IG I++D+LGVI
Sbjct:   40 GRYGFIITITSVDFLSKGKVLESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKVTNLGFFAEAGPLSIFVSTQLIPSDMIFDAQSAVPCFVSEDGSSKISKDDEVRLQIKGTRVDATEIFAIGSIREDYLGVI 171          
BLAST of CB305113 vs. ExPASy Swiss-Prot
Match: RPB7_SCHPO (DNA-directed RNA polymerase II subunit rpb7 OS=Schizosaccharomyces pombe GN=rpb7 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.949e-31
Identity = 65/134 (48.51%), Postives = 97/134 (72.39%), Query Frame = -3
Query:  277 GRHGFVVAI--TSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYPTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGPIKDDFLGVI 669
            G++G+++ +  ++  +I KG +  G GF  F VKY+ V++RPF+GE+++A+V+ VNKMGFFA  GP+ +FVS+HL+P DM+F  + + PNY   D    I+K S VRLKI+GTR DA EIF I  +K+D+LGV+
Sbjct:   41 GQYGYIICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNYSGED--QVIEKGSNVRLKIVGTRTDATEIFAIATMKEDYLGVL 172          
BLAST of CB305113 vs. ExPASy Swiss-Prot
Match: RPB7_YEAST (DNA-directed RNA polymerase II subunit RPB7 OS=Saccharomyces cerevisiae GN=RPB7 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.987e-20
Identity = 50/134 (37.31%), Postives = 82/134 (61.19%), Query Frame = -3
Query:  277 GRHGFVVAITSVENIG--KGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSG-DMPNYPTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGPIKDDFLGVI 669
            G+ G+++ +   +NI   +G I    G   F VKY+ VVF+PFKGE+++  V   ++ GF  + GP+++FV+ HL+P D+ F +G + P+Y +S+  + I+  S +R+KI G       I  IG IK+D+LG I
Sbjct:   40 GKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIK--SRIRVKIEGCISQVSSIHAIGSIKEDYLGAI 171          
The following BLAST results are available for this feature:
BLAST of CB305113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RPB7_SOYBN3.304e-7093.43DNA-directed RNA polymerase II subunit RPB7 OS=Gly... [more]
RPB7_ARATH4.180e-6588.81DNA-directed RNA polymerase II subunit RPB7 OS=Ara... [more]
RPB7_RAT5.145e-3953.38DNA-directed RNA polymerase II subunit RPB7 OS=Rat... [more]
RPB7_MOUSE5.145e-3953.38DNA-directed RNA polymerase II subunit RPB7 OS=Mus... [more]
RPB7_HUMAN5.145e-3953.38DNA-directed RNA polymerase II subunit RPB7 OS=Hom... [more]
RPB7_DANRE5.145e-3954.14DNA-directed RNA polymerase II subunit RPB7 OS=Dan... [more]
RPB7_BOVIN5.145e-3953.38DNA-directed RNA polymerase II subunit RPB7 OS=Bos... [more]
RPB7_DICDI1.655e-3756.06DNA-directed RNA polymerase II subunit rpb7 OS=Dic... [more]
RPB7_SCHPO3.949e-3148.51DNA-directed RNA polymerase II subunit rpb7 OS=Sch... [more]
RPB7_YEAST6.987e-2037.31DNA-directed RNA polymerase II subunit RPB7 OS=Sac... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_D03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_D03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305113 ID=CB305113; Name=CB305113; organism=Citrus sinensis; type=EST; length=671bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCAAAAATTCATTAAATAA
TTGCCACTACCTTCAACACAACTACATTCAGTAAATCTTGTACAACTACA
TAGTTACCCTAAATGAACCCACAAAGCTAAAATCTTCTTCGCGGAGCAAT
AAGTACGTTAATGAACACTTCAAAGGCAGATCAATGGCCTACAAAACTAA
ACAACAAGGAACAGCAAGCGAGATGTGTGAAGTTGATCTTGGAGCTATTC
CCTCACTAAATCGTTGTAGGATCATTGATCACTCCCAAAAAATCATCCTT
TATGGGACCGATGCAAAAAATTTCAGGGGCATCAACTCGAGTCCCAATTA
TCTTTAACCGAACCTCACTATCCTTTTGAATCTTCACCGATCCATCTGAG
GTAGGGTAATTTGGCATATCTCCTGACTGGAACTCCATATCATCCGGTAT
CAAATGATTTGAAACAAAAATTTGAACAGGTCCAGCTTCAGCGAAAAACC
CCATCTTGTTAACCATGGAAACAACAGCTTCCAAAATTTCCCCTTTAAAG
GGTCTAAAAACAACACACTGGTACTTCACCGGAAAAGTCACGAACCCTGT
CCCATCCCGAATCAGGCCCTTCCCGATATTTTCCACACTCGTTATCGCCA
CCACAAATCCATGCCGTCCAC
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