CB305113
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB305113 vs. ExPASy Swiss-Prot
Match: RPB7_SOYBN (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1) HSP 1 Score: 264.618 bits (675), Expect = 3.304e-70 Identity = 128/137 (93.43%), Postives = 132/137 (96.35%), Query Frame = -3 Query: 259 GRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYPTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGPIKDDFLGVINDPTTI 669 GRHGFVVA+T +ENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVV+MVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNY TSDGSVKIQKDSEVRLKIIGTRVDA EIFCIG IKDDFLGVINDP T+ Sbjct: 40 GRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV 176
BLAST of CB305113 vs. ExPASy Swiss-Prot
Match: RPB7_ARATH (DNA-directed RNA polymerase II subunit RPB7 OS=Arabidopsis thaliana GN=RPB19 PE=1 SV=1) HSP 1 Score: 247.669 bits (631), Expect = 4.180e-65 Identity = 119/134 (88.81%), Postives = 126/134 (94.03%), Query Frame = -3 Query: 268 GRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYPTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGPIKDDFLGVINDP 669 GRHGFVVAIT ++ IGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVV++VNKMGFFAEAGPVQIFVS HLIPDDMEFQ+GDMPNY TSDGSVKIQK+ EVRLKIIGTRVDA IFC+G IKDDFLGVINDP Sbjct: 40 GRHGFVVAITGIDTIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQAGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDP 173
BLAST of CB305113 vs. ExPASy Swiss-Prot
Match: RPB7_RAT (DNA-directed RNA polymerase II subunit RPB7 OS=Rattus norvegicus GN=Polr2g PE=2 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 5.145e-39 Identity = 71/133 (53.38%), Postives = 103/133 (77.44%), Query Frame = -3 Query: 274 GRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYPTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGPIKDDFLGVIN 669 G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+ F+S H IP +MEF + + P Y T D + IQ+D E+RLKI+GTRVD +IF IG + DD+LG+++ Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172
BLAST of CB305113 vs. ExPASy Swiss-Prot
Match: RPB7_MOUSE (DNA-directed RNA polymerase II subunit RPB7 OS=Mus musculus GN=Polr2g PE=2 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 5.145e-39 Identity = 71/133 (53.38%), Postives = 103/133 (77.44%), Query Frame = -3 Query: 274 GRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYPTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGPIKDDFLGVIN 669 G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+ F+S H IP +MEF + + P Y T D + IQ+D E+RLKI+GTRVD +IF IG + DD+LG+++ Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172
BLAST of CB305113 vs. ExPASy Swiss-Prot
Match: RPB7_HUMAN (DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens GN=POLR2G PE=1 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 5.145e-39 Identity = 71/133 (53.38%), Postives = 103/133 (77.44%), Query Frame = -3 Query: 274 GRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYPTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGPIKDDFLGVIN 669 G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+ F+S H IP +MEF + + P Y T D + IQ+D E+RLKI+GTRVD +IF IG + DD+LG+++ Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172
BLAST of CB305113 vs. ExPASy Swiss-Prot
Match: RPB7_DANRE (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio GN=polr2g PE=2 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 5.145e-39 Identity = 72/133 (54.14%), Postives = 103/133 (77.44%), Query Frame = -3 Query: 274 GRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYPTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGPIKDDFLGVIN 669 G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+ F+S H IP +MEF + + P Y T D V IQ+D E+RLKI+GTRVD +IF IG + DD+LG+++ Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172
BLAST of CB305113 vs. ExPASy Swiss-Prot
Match: RPB7_BOVIN (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus GN=POLR2G PE=2 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 5.145e-39 Identity = 71/133 (53.38%), Postives = 103/133 (77.44%), Query Frame = -3 Query: 274 GRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYPTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGPIKDDFLGVIN 669 G++GFV+A+T+++NIG G+I+ G GFV +PVKY+ +VFRPFKGE+++AVV+ VNK+G F E GP+ F+S H IP +MEF + + P Y T D + IQ+D E+RLKI+GTRVD +IF IG + DD+LG+++ Sbjct: 40 GKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172
BLAST of CB305113 vs. ExPASy Swiss-Prot
Match: RPB7_DICDI (DNA-directed RNA polymerase II subunit rpb7 OS=Dictyostelium discoideum GN=polr2g PE=3 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 1.655e-37 Identity = 74/132 (56.06%), Postives = 101/132 (76.52%), Query Frame = -3 Query: 277 GRHGFVVAITSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQS-GDMPNYPTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGPIKDDFLGVI 669 GR+GF++ ITSV+ + KG + + +G+V F VKY+ ++F+PFKGE+L+A+V+ V +GFFAEAGP+ IFVS LIP DM F + +P + + DGS KI KD EVRL+I GTRVDA EIF IG I++D+LGVI Sbjct: 40 GRYGFIITITSVDFLSKGKVLESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKVTNLGFFAEAGPLSIFVSTQLIPSDMIFDAQSAVPCFVSEDGSSKISKDDEVRLQIKGTRVDATEIFAIGSIREDYLGVI 171
BLAST of CB305113 vs. ExPASy Swiss-Prot
Match: RPB7_SCHPO (DNA-directed RNA polymerase II subunit rpb7 OS=Schizosaccharomyces pombe GN=rpb7 PE=1 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 3.949e-31 Identity = 65/134 (48.51%), Postives = 97/134 (72.39%), Query Frame = -3 Query: 277 GRHGFVVAI--TSVENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDMPNYPTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGPIKDDFLGVI 669 G++G+++ + ++ +I KG + G GF F VKY+ V++RPF+GE+++A+V+ VNKMGFFA GP+ +FVS+HL+P DM+F + + PNY D I+K S VRLKI+GTR DA EIF I +K+D+LGV+ Sbjct: 41 GQYGYIICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNYSGED--QVIEKGSNVRLKIVGTRTDATEIFAIATMKEDYLGVL 172
BLAST of CB305113 vs. ExPASy Swiss-Prot
Match: RPB7_YEAST (DNA-directed RNA polymerase II subunit RPB7 OS=Saccharomyces cerevisiae GN=RPB7 PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 6.987e-20 Identity = 50/134 (37.31%), Postives = 82/134 (61.19%), Query Frame = -3 Query: 277 GRHGFVVAITSVENIG--KGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSG-DMPNYPTSDGSVKIQKDSEVRLKIIGTRVDAPEIFCIGPIKDDFLGVI 669 G+ G+++ + +NI +G I G F VKY+ VVF+PFKGE+++ V ++ GF + GP+++FV+ HL+P D+ F +G + P+Y +S+ + I+ S +R+KI G I IG IK+D+LG I Sbjct: 40 GKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIK--SRIRVKIEGCISQVSSIHAIGSIKEDYLGAI 171 The following BLAST results are available for this feature:
BLAST of CB305113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB305113 ID=CB305113; Name=CB305113; organism=Citrus sinensis; type=EST; length=671bpback to top |