CK934391

Overview
NameCK934391
Unique NameCK934391
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1665 contig Csv1_Contig1665:1..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934391 vs. ExPASy Swiss-Prot
Match: GME1_ORYSJ (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1)

HSP 1 Score: 431.409 bits (1108), Expect = 2.550e-120
Identity = 209/223 (93.72%), Postives = 214/223 (95.96%), Query Frame = 1
Query:   97 MGSTE--GT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDARPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAF 756
            MGS+E  GT YG YTY ELERE YWPSEKLRIS+TGAGGFI SHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVT GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEA+RI+GVKRFFYASSACIYPEFKQLETNVSLKESDA PAEPQDAYGLEKLA+EELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAF
Sbjct:    1 MGSSEKNGTAYGEYTYAELEREQYWPSEKLRISITGAGGFIGSHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTNGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAF 223          
BLAST of CK934391 vs. ExPASy Swiss-Prot
Match: GME1_ORYSI (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica GN=OsI_032456 PE=2 SV=1)

HSP 1 Score: 429.098 bits (1102), Expect = 1.266e-119
Identity = 208/223 (93.27%), Postives = 213/223 (95.52%), Query Frame = 1
Query:   97 MGSTE--GT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDARPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAF 756
            MGS+E  GT YG YTY ELERE YWPSEKLRIS+TGAGGFI SHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVT  VDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEA+RI+GVKRFFYASSACIYPEFKQLETNVSLKESDA PAEPQDAYGLEKLA+EELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAF
Sbjct:    1 MGSSEKNGTAYGEYTYAELEREQYWPSEKLRISITGAGGFIGSHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTNSVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAF 223          
BLAST of CK934391 vs. ExPASy Swiss-Prot
Match: GME_ARATH (GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1 SV=1)

HSP 1 Score: 421.009 bits (1081), Expect = 3.446e-117
Identity = 200/222 (90.09%), Postives = 213/222 (95.95%), Query Frame = 1
Query:   97 MGSTEGT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLE-TNVSLKESDARPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAF 756
            MG+T GT YGAYTY+ELERE YWPSE L+IS+TGAGGFIASHIARRLK EGHY+IASDWKKNEHMTEDMFC EFHLVDLRVM+NCLKVT+GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNM+EA+RI+G+KRFFYASSACIYPEFKQLE TNVSLKESDA PAEPQDAYGLEKLA+EELCKHY KDFGIECR+GRFHNIYGPFGTWKGGREKAPAAF
Sbjct:    1 MGTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAF 222          
BLAST of CK934391 vs. ExPASy Swiss-Prot
Match: GME2_ORYSJ (GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica GN=GME-2 PE=2 SV=2)

HSP 1 Score: 419.853 bits (1078), Expect = 7.678e-117
Identity = 199/210 (94.76%), Postives = 205/210 (97.62%), Query Frame = 1
Query:  127 YTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDARPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAF 756
            YTY ELE+EPYWP EKLRIS+TGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVT GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEA+RI+GVKRFFYASSACIYPEFKQL+T VSLKESDA PAEPQDAYGLEKLA+EELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAF
Sbjct:    7 YTYVELEKEPYWPFEKLRISITGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTTGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLDTVVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAF 216          
BLAST of CK934391 vs. ExPASy Swiss-Prot
Match: FCL_ECOLI (GDP-L-fucose synthetase OS=Escherichia coli (strain K12) GN=fcl PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.749e-12
Identity = 45/181 (24.86%), Postives = 83/181 (45.86%), Query Frame = 1
Query:  172 KLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEF-KQLETNVSLKESDARPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGP 711
            K R+ + G  G + S I R+L+  G   +    +   ++ +    H+F              ++ +D V+  AA +GG+    +  +  +Y N MI  N++ A+  + V +  +  S+CIYP+  KQ      L +    P    + Y + K+A  +LC+ Y + +G + R     N+YGP
Sbjct:    3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFF------------ASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPT--NEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGP 169          
BLAST of CK934391 vs. ExPASy Swiss-Prot
Match: YTCB_BACSU (Uncharacterized UDP-glucose epimerase ytcB OS=Bacillus subtilis GN=ytcB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 55/189 (29.10%), Postives = 88/189 (46.56%), Query Frame = 1
Query:  175 LRISVTGAGGFIASHIARRL-KSEGHYIIASD--------WKKNEHMTEDMFCHEFHLVDLRVMDNCL-KVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDARPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGP 711
            ++I VTGA GFI SH+   L K + H +I  D          K +++   +    F  +   ++   L  + +GVD +F+LAA  G      ++      +N      +LEA R   ++ F +AS++ +Y E +        K S+     P   YG+ KL  E+LC  Y + FGI   + RF  +YGP
Sbjct:    1 MKILVTGAAGFIGSHLCEELLKDKKHNVIGIDDFIGPTPFSLKLKNLKNLLPEKRFTFIKENLLTADLASLLEGVDVIFHLAAIPGVRSSWGNHFHPYAAHNIQALQRLLEACREHSIQTFVFASTSSVYGEKQG-------KVSENTSLSPLSPYGVTKLTGEKLCHVYKQSFGIPIVILRFFTVYGP 182          
The following BLAST results are available for this feature:
BLAST of CK934391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GME1_ORYSJ2.550e-12093.72GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME1_ORYSI1.266e-11993.27GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME_ARATH3.446e-11790.09GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana ... [more]
GME2_ORYSJ7.678e-11794.76GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp.... [more]
FCL_ECOLI8.749e-1224.86GDP-L-fucose synthetase OS=Escherichia coli (strai... [more]
YTCB_BACSU1.143e-1129.10Uncharacterized UDP-glucose epimerase ytcB OS=Baci... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004259_F07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934391 ID=CK934391; Name=CK934391; organism=Citrus sinensis; type=EST; length=757bp
GGGGATTCAATCTTTAATTCTTCCAAAGCCAGCCATTCTCCTCCTCCTTT
ATCTTCTCCTCTTCATTAAACTCTCAAAGTTCAGGTGTTTTTCAGAATGG
GAAGTACTGAAGGAACCTATGGTGCATACACCTATGAGGAGCTTGAGAGG
GAACCTTACTGGCCTTCCGAGAAGCTCCGAATTTCTGTCACTGGGGCAGG
TGGTTTTATTGCCTCCCACATTGCTCGGCGTCTGAAGAGTGAAGGCCATT
ACATTATTGCTTCTGACTGGAAGAAGAATGAGCACATGACTGAGGATATG
TTCTGTCATGAATTCCACCTTGTCGACCTTAGGGTCATGGACAATTGCTT
GAAAGTTACTAAGGGGGTTGACCATGTGTTTAACCTTGCTGCTGATATGG
GTGGTATGGGCTTTATTCAGTCCAACCACTCTGTCATCATGTATAACAAT
ACCATGATCAGCTTCAACATGCTTGAGGCTTCTAGGATCAGTGGAGTAAA
GAGGTTTTTCTATGCCTCTAGTGCCTGCATCTATCCCGAATTTAAGCAGC
TGGAAACTAACGTAAGCTTGAAGGAGTCTGATGCCAGGCCCGCTGAGCCT
CAAGATGCTTATGGCTTGGAGAAGCTTGCAAGTGAGGAGTTGTGTAAGCA
CTACACGAAAGACTTTGGAATTGAGTGTCGTGTTGGAAGATTCCACAATA
TTTATGGGCCTTTTGGAACATGGAAAGGTGGAAGGGAAAAAGCTCCTGCT
GCTTTTT
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